Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_F04
         (880 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q6UV17 Cluster: Endonuclease and reverse transcriptase-...    50   6e-05
UniRef50_Q8I7L1 Cluster: Putative uncharacterized protein; n=2; ...    33   7.2  

>UniRef50_Q6UV17 Cluster: Endonuclease and reverse transcriptase-like
            protein; n=25; Arthropoda|Rep: Endonuclease and reverse
            transcriptase-like protein - Bombyx mori (Silk moth)
          Length = 986

 Score = 50.4 bits (115), Expect = 6e-05
 Identities = 29/50 (58%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
 Frame = -1

Query: 607  CFEELFQN-PDVLFIHFLFSRPPLEQNHPYYLEPLCSSIVRFQRSFLPRT 461
            C EELF+  P   F H         + HPYYLEPL SS VRFQRSFLPRT
Sbjct: 891  CSEELFEMIPASRFYHRTARHR--SRVHPYYLEPLRSSTVRFQRSFLPRT 938


>UniRef50_Q8I7L1 Cluster: Putative uncharacterized protein; n=2;
           Caenorhabditis elegans|Rep: Putative uncharacterized
           protein - Caenorhabditis elegans
          Length = 727

 Score = 33.5 bits (73), Expect = 7.2
 Identities = 24/93 (25%), Positives = 47/93 (50%), Gaps = 1/93 (1%)
 Frame = +1

Query: 286 FIRNPILLPLKSTRTRPSLSSHRNNAKGAAKTPTTTE-KSPQSPXLKKDTS*RKTPXMVK 462
           FI+ PI +PL++  + PS S      + + +    ++ K  +    +K +S  KTP  V+
Sbjct: 219 FIKPPIQIPLEAVVSLPSTSKAVIEDESSLREMLLSQLKQSKKRNAEKSSSQEKTPKRVR 278

Query: 463 YAAGKISGNVL*MNTAVPNSMDDSAPVAGAKIK 561
             + ++S +V  +  A P ++    PVA  ++K
Sbjct: 279 KNSSRLSNSVKNIFEA-PVAISPQVPVAKIEVK 310


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 739,981,079
Number of Sequences: 1657284
Number of extensions: 13921198
Number of successful extensions: 29995
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 28805
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29975
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 78702453312
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)