Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_F04
         (880 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyce...    27   4.7  
SPCC1322.14c |vtc4||vacuolar transporter chaperone |Schizosaccha...    26   8.1  
SPBC21.06c |cdc7|pld1, its10|serine/threonine protein kinase Cdc...    26   8.1  

>SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 428

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
 Frame = -1

Query: 547 PPLEQNHPYYLEPLCSSIVRFQRSFLPR--TSPXKVFSAMTCPSSXR 413
           P   QN+P    P+  S  RFQ +   R  T P  V+ A   P+S R
Sbjct: 206 PDFNQNYPTESNPMFLSTPRFQNTNGQRTLTVPVSVWDARQPPTSSR 252


>SPCC1322.14c |vtc4||vacuolar transporter chaperone
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 721

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 14/45 (31%), Positives = 17/45 (37%)
 Frame = -3

Query: 539 GAESSILFGTAVFIYSTFPEIFPAAYFTXQGVFRYDVSFFKXGLC 405
           GA S  L       YSTF  ++ A         RYD  F    +C
Sbjct: 660 GAASFTLVALFAIFYSTFLYLWRAVNIAKHNAVRYDDRFGPTAIC 704


>SPBC21.06c |cdc7|pld1, its10|serine/threonine protein kinase
           Cdc7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1062

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 12/51 (23%), Positives = 20/51 (39%)
 Frame = +1

Query: 340 LSSHRNNAKGAAKTPTTTEKSPQSPXLKKDTS*RKTPXMVKYAAGKISGNV 492
           +S   N       TP   +  P  P L +    +KTP   +Y + +   N+
Sbjct: 382 ISESNNFNASPLSTPLKAQFDPSKPALNRSIDHQKTPQHKRYLSTEFKENI 432


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,174,325
Number of Sequences: 5004
Number of extensions: 62328
Number of successful extensions: 169
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)