Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_F04
         (880 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_03_0098 - 12341741-12341769,12342530-12342927,12343843-123438...    31   1.6  
02_04_0115 - 19888252-19888406,19888507-19888573,19888867-198891...    30   2.8  

>09_03_0098 -
           12341741-12341769,12342530-12342927,12343843-12343889,
           12344916-12345244,12345523-12345601
          Length = 293

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 18/46 (39%), Positives = 23/46 (50%)
 Frame = +1

Query: 289 IRNPILLPLKSTRTRPSLSSHRNNAKGAAKTPTTTEKSPQSPXLKK 426
           ++ PI  P    R+   L  HR +AK  A+  TTT K P S  L K
Sbjct: 242 MQQPISPPNSLARSLAGLR-HRRSAKSGARRSTTTAKGPTSSRLVK 286


>02_04_0115 -
           19888252-19888406,19888507-19888573,19888867-19889101,
           19889179-19889255,19889350-19889415,19889517-19889565,
           19889651-19889701,19889799-19889851,19889973-19890024,
           19890126-19890214,19890308-19890393,19890603-19890659,
           19890742-19890919,19891852-19891908,19892209-19892439
          Length = 500

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = +1

Query: 286 FIRNPILLPLKSTRTRPSLSSHRNNAKGAAKTPTTTEKSPQSP 414
           F  +P+L P+     + S S  +NN K   +TPT+   SP +P
Sbjct: 120 FAVSPMLTPVSGKAVKTSKSKTKNN-KAGPQTPTSNVGSPLNP 161


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,362,384
Number of Sequences: 37544
Number of extensions: 364558
Number of successful extensions: 686
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 678
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 686
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2479731924
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)