Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_F04
         (880 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_32123| Best HMM Match : Keratin_B2 (HMM E-Value=0.019)              29   6.6  
SB_31262| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.6  

>SB_32123| Best HMM Match : Keratin_B2 (HMM E-Value=0.019)
          Length = 1097

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = -2

Query: 570  LSTFYFRARHWSRIIHTIWNRCVHL*YVSRDLSCRVLH 457
            + T  ++ RH   +I T+  R  H  +V + LSCR  H
Sbjct: 977  MQTSSYKRRHTDLVIQTLSYRPCHTDFVMQTLSCRPRH 1014


>SB_31262| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 358

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 14/27 (51%), Positives = 18/27 (66%)
 Frame = +1

Query: 319 STRTRPSLSSHRNNAKGAAKTPTTTEK 399
           ST T  S +S R +A+G AKT  TT+K
Sbjct: 233 STITTSSRASSRGSARGGAKTTKTTKK 259


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,257,125
Number of Sequences: 59808
Number of extensions: 458462
Number of successful extensions: 1030
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 954
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1030
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2502612210
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)