Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_F04
         (880 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    23   3.7  
AY569706-1|AAS86659.1|  397|Apis mellifera complementary sex det...    23   4.9  
AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex det...    23   4.9  

>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +1

Query: 175 LYTGKW*SKQTKALILKDLYRKKNNM 252
           L T KW +K +    L DLY  KN +
Sbjct: 379 LDTKKWNNKISALRALNDLYNVKNTL 404


>AY569706-1|AAS86659.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = +1

Query: 289 IRNPILLPLKSTRTRPSLSSHRNNAKGAAKTPTTTEKSPQ 408
           IR    L  + +++R   S  R+NA   +KT   ++K P+
Sbjct: 69  IREIEKLGSERSKSRSPDSRDRSNASNTSKTVILSDKGPE 108


>AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = +1

Query: 289 IRNPILLPLKSTRTRPSLSSHRNNAKGAAKTPTTTEKSPQ 408
           IR    L  + +++R   S  R+NA   +KT   ++K P+
Sbjct: 69  IREIEKLGSERSKSRSPDSRDRSNASNTSKTVILSDKGPE 108


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 206,446
Number of Sequences: 438
Number of extensions: 3918
Number of successful extensions: 10
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28523595
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)