Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_F04
         (880 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g54400.1 68418.m06775 expressed protein                             31   0.77 
At1g53300.1 68414.m06041 thioredoxin family protein contains Pfa...    29   3.1  
At1g75310.1 68414.m08748 DNAJ heat shock N-terminal domain-conta...    28   7.2  
At3g55270.1 68416.m06138 MAP kinase phosphatase (MKP1) identical...    28   9.5  
At2g34730.1 68415.m04265 myosin heavy chain-related low similari...    28   9.5  
At1g35290.1 68414.m04375 thioesterase family protein contains Pf...    28   9.5  

>At5g54400.1 68418.m06775 expressed protein
          Length = 292

 Score = 31.5 bits (68), Expect = 0.77
 Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
 Frame = -3

Query: 578 CSFYPLFIFAPATGAESSILFGTAVFIYSTFPEIFPAAYFTXQGV-FRYDVSFFKXGLCG 402
           C F+  F+F+ A  A  S  F  AV   S     F AA F    V  RY+++    G  G
Sbjct: 51  CVFFQSFLFSNAAAARFSAGFFGAVTALSAVCLFFAAANFFYSAVPLRYEMAQRMVGSVG 110

Query: 401 DFS 393
           D+S
Sbjct: 111 DWS 113


>At1g53300.1 68414.m06041 thioredoxin family protein contains Pfam
           profiles PF00085: Thioredoxin, PF00515: TPR Domain;
           similar to tetratricopeptide repeat protein 2
           (GI:7248701) [Drosophila melanogaster]; similar to DnaJ
           homolog subfamily C member 7 (Tetratricopeptide repeat
           protein 2) (TPR repeat protein 2) (Swiss-Prot:Q99615)
           [Homo sapiens]
          Length = 699

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 17/65 (26%), Positives = 30/65 (46%)
 Frame = +1

Query: 298 PILLPLKSTRTRPSLSSHRNNAKGAAKTPTTTEKSPQSPXLKKDTS*RKTPXMVKYAAGK 477
           P++    S R++ + SS  NN +  + + TT+  S   P L   +S   +P     A   
Sbjct: 79  PVIGRSNSVRSQSNSSSGNNNLRPRSDSATTSSSSHSQPLLSSSSSSATSPAPTSPANVL 138

Query: 478 ISGNV 492
            +GN+
Sbjct: 139 PTGNI 143


>At1g75310.1 68414.m08748 DNAJ heat shock N-terminal domain-containing
            protein low similarity to SP|Q27974 Auxilin {Bos taurus};
            contains Pfam profile PF00226: DnaJ domain
          Length = 1448

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +1

Query: 40   DLISQCTVRRATNRASLYAHVFK*LHRSCS 129
            DL+S  +VR+A  +A+LY H  K   R  S
Sbjct: 1393 DLVSSASVRKAYRKATLYVHPDKLQQRGAS 1422


>At3g55270.1 68416.m06138 MAP kinase phosphatase (MKP1) identical to
           MAP kinase phosphatase (MKP1) GI:13540262 from
           [Arabidopsis thaliana]
          Length = 534

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = +1

Query: 295 NPILLPLKSTRTRPSLSSHRNNAKGAAKTPTTTEKSPQSP 414
           N  L P  + +  PSL+  R + KG+ K P   + +  +P
Sbjct: 316 NTFLQPSPNRKASPSLAERRGSLKGSLKLPGLADSNRGTP 355


>At2g34730.1 68415.m04265 myosin heavy chain-related low similarity
           to  SP|P14105 Myosin heavy chain, nonmuscle (Cellular
           myosin heavy chain) {Gallus gallus}
          Length = 825

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 11/42 (26%), Positives = 21/42 (50%)
 Frame = -1

Query: 586 NPDVLFIHFLFSRPPLEQNHPYYLEPLCSSIVRFQRSFLPRT 461
           +PD +  HF      ++++H Y ++ L      F+R +L  T
Sbjct: 326 SPDEMINHFKIEMNKMKRDHDYKIQELTEQCFTFKRKYLNLT 367


>At1g35290.1 68414.m04375 thioesterase family protein contains Pfam
           profile PF03061: thioesterase family protein
          Length = 189

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +1

Query: 283 CFIRNPILLPLKSTRTRPSLS 345
           CF   P++LPL+ST+T   LS
Sbjct: 18  CFSSRPLILPLRSTKTFKPLS 38


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,243,722
Number of Sequences: 28952
Number of extensions: 316592
Number of successful extensions: 699
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 690
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 699
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2067932800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)