Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_F03
         (898 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein Sap155|Sc...    31   0.29 
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    28   2.1  
SPBC4.02c |||conserved fungal protein|Schizosaccharomyces pombe|...    27   3.6  
SPCC4B3.15 |mid1|dmf1|medial ring protein Mid1|Schizosaccharomyc...    27   4.8  
SPAC1420.01c ||SPAC56E4.08c|DUF1752 family protein|Schizosacchar...    26   6.3  
SPAC922.05c |||membrane transporter |Schizosaccharomyces pombe|c...    26   8.4  

>SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein
           Sap155|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1188

 Score = 30.7 bits (66), Expect = 0.29
 Identities = 17/41 (41%), Positives = 21/41 (51%)
 Frame = +2

Query: 110 DKQY*VVMEKEHQPDSMATITMKPEYPPSEVYSTSEPPPAY 232
           +K+  VV EK   P  + T     E  PSE Y+  EPPP Y
Sbjct: 262 NKEVNVVEEKLRPPVRLLTEEELNELLPSEGYAILEPPPGY 302


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +2

Query: 149 PDSMATITMKPEYPPSEVYSTSEPPP 226
           P   +T  + P  PP+   STS PPP
Sbjct: 293 PTGNSTTPVTPTVPPTSTSSTSTPPP 318



 Score = 27.9 bits (59), Expect = 2.1
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +2

Query: 149 PDSMATITMKPEYPPSEVYSTSEPPP 226
           P   +T  + P  PP+   STS PPP
Sbjct: 347 PTGNSTTPVTPTVPPTSTSSTSTPPP 372


>SPBC4.02c |||conserved fungal protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 456

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +2

Query: 137 KEHQPDSMATITMKPEYPPSEVYSTS 214
           + +  DS +TI  +PEYPP   +++S
Sbjct: 306 RRNSHDSNSTIICEPEYPPDTSFNSS 331


>SPCC4B3.15 |mid1|dmf1|medial ring protein Mid1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 920

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -1

Query: 868 ALRERTRLECEGKRLSMGSSYDAPPRSSY 782
           +LR++   + E KR+S GSSY +  R  Y
Sbjct: 313 SLRKKVLAKMEAKRISSGSSYASTLRKVY 341


>SPAC1420.01c ||SPAC56E4.08c|DUF1752 family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 580

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 16/56 (28%), Positives = 28/56 (50%)
 Frame = +2

Query: 182 EYPPSEVYSTSEPPPAYRHRVSTSVQIAKIAALTVVASSFILGTFILASSWVAARS 349
           E+    + + S  PP  + + STSV  A   A+ +V S+  LG+    +S  A ++
Sbjct: 215 EHADRSIKTHSSAPPLNQQKSSTSVNDAVSKAIQLVKSTSDLGSLSTNTSSTAQKN 270


>SPAC922.05c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 504

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -2

Query: 216 SDVLYTSEGGYSGFIVIVAIESGWCSFSIT 127
           S V    +G Y+GFIV++A+ S    F ++
Sbjct: 211 SSVNSVGDGTYAGFIVLMAVGSALALFMVS 240


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,425,220
Number of Sequences: 5004
Number of extensions: 66567
Number of successful extensions: 198
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 198
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 452494940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)