Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP01_F_F03
(898 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1486 - 37709159-37709377,37709558-37709821,37709903-377099... 33 0.41
01_07_0303 + 42615578-42615709,42616273-42616312,42616393-426164... 31 1.6
02_01_0597 - 4433105-4433467,4433671-4433860,4434569-4434786,443... 30 2.9
12_02_0416 - 18891945-18892319,18892416-18892550,18892634-18893638 29 3.8
05_01_0281 + 2186500-2187435,2187518-2187616,2187707-2187772,218... 29 5.0
07_03_1450 + 26620178-26620456,26622122-26622775 29 6.6
12_02_1197 + 26915933-26916298 28 8.8
03_05_0562 + 25648581-25648841,25650243-25650626 28 8.8
02_05_1006 + 33448476-33448915,33449016-33449083,33449681-334497... 28 8.8
>01_06_1486 -
37709159-37709377,37709558-37709821,37709903-37709995,
37710387-37710581,37710665-37710763,37710884-37711132,
37711264-37711467,37711543-37711602,37711731-37711913,
37712382-37712999,37713101-37713169,37713275-37713853
Length = 943
Score = 32.7 bits (71), Expect = 0.41
Identities = 31/153 (20%), Positives = 60/153 (39%), Gaps = 1/153 (0%)
Frame = +2
Query: 131 MEKEHQPDSMATITMKPEYPPSEVYSTSEPPPAYR-HRVSTSVQIAKIAALTVVASSFIL 307
+ + + S+A++ +P E S S PPP R R S + + +TV++ S +
Sbjct: 148 VSQREEEKSLASVVKRPML-LDERRSLSPPPPQQRAPRFDLSPYLVLMLVVTVISFSLAI 206
Query: 308 GTFILASSWVAARSSCHQLEQLDAMLDKELALEGRAYGNDALVSG*AFATSKCPRFAWST 487
++ A+ SC + +D E +G+D + S + + C R
Sbjct: 207 WQWMKATVLQEKIRSCCSVSTVDCKTTTEAFKINGQHGSDFINSA-DWNLASCSRMLVFA 265
Query: 488 AHAVFXCYLRRASRHLHDPVSSKTTHSTMPSPK 586
Y+ + R D + ++T +P K
Sbjct: 266 IPVFLVKYIDQLRRRNTDSIRLRSTEEEVPLKK 298
>01_07_0303 +
42615578-42615709,42616273-42616312,42616393-42616477,
42616634-42616813,42618274-42618354,42618890-42619011,
42619867-42620723,42621656-42621897,42622107-42622200,
42622306-42622476,42622695-42622740,42624101-42624111,
42624141-42624392
Length = 770
Score = 30.7 bits (66), Expect = 1.6
Identities = 22/96 (22%), Positives = 47/96 (48%), Gaps = 4/96 (4%)
Frame = +3
Query: 294 PPSSW--EPLYWLRVG*QLVHHAIS*SSWMQCSTKNSLW-KAEPTEMMPWLADEPLPLAN 464
PP +W P+Y+ + + + + S W N +W + T+++ W+ EP N
Sbjct: 207 PPKNWINGPMYYNGIYHEFYQYNPNGSVW-----GNIVWGHSVSTDLINWIRLEPAIEGN 261
Query: 465 AHA-LHGVPPMLSSXVT*DEPAVIFTTQSLQRRRTQ 569
+ ++G ++ +T D+P +I+T ++R+ Q
Sbjct: 262 TPSDINGCWTGSATILTGDQPVIIYTGADTEKRQVQ 297
>02_01_0597 -
4433105-4433467,4433671-4433860,4434569-4434786,
4434882-4436556,4437137-4438113
Length = 1140
Score = 29.9 bits (64), Expect = 2.9
Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Frame = +2
Query: 590 TKTNCRKLTTIRMTHQTRV--MRVLSPTVLLKRTTNLKRLDRCSNCLFSLTLMSWRALS 760
+ T C+ L + H+ + +++ ++ TT+ K +D CSNC S +L A+S
Sbjct: 297 SSTGCKDLEAMIKEHEKFIGDQKIIMQSLSKDVTTSKKLVDDCSNCQLSASLRPHDAVS 355
>12_02_0416 - 18891945-18892319,18892416-18892550,18892634-18893638
Length = 504
Score = 29.5 bits (63), Expect = 3.8
Identities = 15/50 (30%), Positives = 25/50 (50%)
Frame = +2
Query: 590 TKTNCRKLTTIRMTHQTRVMRVLSPTVLLKRTTNLKRLDRCSNCLFSLTL 739
T T + ++ +R+T R MR+L+ + + + L RC CL L L
Sbjct: 330 TTTVVKGVSVVRLTEAVRTMRILAINMFVLNLAKVIDLMRCFPCLEKLYL 379
>05_01_0281 +
2186500-2187435,2187518-2187616,2187707-2187772,
2187850-2188266
Length = 505
Score = 29.1 bits (62), Expect = 5.0
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = +2
Query: 173 MKPEYPPSEVYSTSEPPPAYRHRVSTSVQ 259
M P PP +++ PPP + H +T+V+
Sbjct: 457 MFPAAPPMSMFAPPPPPPPFPHAAATAVE 485
Score = 28.7 bits (61), Expect = 6.6
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = +2
Query: 143 HQPDSMA-TITMKPEYPPSEVYSTSEPPPAYRHRVSTS 253
H+ D+ A T T+ PPSE + PPPA +TS
Sbjct: 244 HRLDTAAATATVAQRLPPSEARAPDAPPPAATATATTS 281
>07_03_1450 + 26620178-26620456,26622122-26622775
Length = 310
Score = 28.7 bits (61), Expect = 6.6
Identities = 24/77 (31%), Positives = 33/77 (42%)
Frame = +2
Query: 203 YSTSEPPPAYRHRVSTSVQIAKIAALTVVASSFILGTFILASSWVAARSSCHQLEQLDAM 382
+S PPPAY H + A A TV G F+ A S QL + +++
Sbjct: 148 FSLPPPPPAYHHHHLIQEEPATTAHCTVAGDGGEGGDFLAALS-----EDNRQLRRRNSL 202
Query: 383 LDKELALEGRAYGNDAL 433
L ELA + Y ND +
Sbjct: 203 LLSELAHMKKLY-NDII 218
>12_02_1197 + 26915933-26916298
Length = 121
Score = 28.3 bits (60), Expect = 8.8
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -2
Query: 222 GGSDVLYTSEGGYSGFIVIVAIESGW 145
GG DVL + GG +++VA ES W
Sbjct: 3 GGEDVLVVAPGGGRDALLLVAQESAW 28
>03_05_0562 + 25648581-25648841,25650243-25650626
Length = 214
Score = 28.3 bits (60), Expect = 8.8
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = -1
Query: 550 RDWVVKMTAGSSQVTXEDSMGGTPCKAWAFASGKGSSAN 434
RD VV + G+ + + GG A A SG GS+A+
Sbjct: 2 RDVVVAVGGGTKAASRQQGQGGVTLAAAAAGSGSGSAAS 40
>02_05_1006 +
33448476-33448915,33449016-33449083,33449681-33449751,
33449905-33450156,33450473-33450636,33450731-33450773,
33451044-33451161,33451384-33451481,33451550-33451594
Length = 432
Score = 28.3 bits (60), Expect = 8.8
Identities = 12/28 (42%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Frame = -1
Query: 166 CSHRVWLVFFFHHDL-ILFIKIYLLLVS 86
C H+ WL + HH++ ILF+K L L++
Sbjct: 403 CFHKSWLRYNAHHNIQILFVKHNLRLIT 430
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,875,840
Number of Sequences: 37544
Number of extensions: 501440
Number of successful extensions: 1524
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1469
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1522
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2530383840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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