Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_F03
         (898 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39796| Best HMM Match : VWA (HMM E-Value=0)                         34   0.18 
SB_28322| Best HMM Match : Ion_trans (HMM E-Value=1.6e-41)             29   5.1  
SB_48526| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.1  
SB_30684| Best HMM Match : 7tm_1 (HMM E-Value=9.3e-11)                 29   5.1  
SB_11571| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.7  
SB_55818| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.9  

>SB_39796| Best HMM Match : VWA (HMM E-Value=0)
          Length = 2119

 Score = 33.9 bits (74), Expect = 0.18
 Identities = 41/185 (22%), Positives = 69/185 (37%), Gaps = 7/185 (3%)
 Frame = +2

Query: 155  SMATITMKPEYPPSEVYSTSEPPPAYRHRVSTSVQIAKIAALTVVASSFILGTFILASSW 334
            ++AT T       + V +T+         ++TS  +       VV S+ +    I  S+ 
Sbjct: 1914 AVATSTKVATLTSTHVATTTSVAIETSTAIATSTHVTTQLNTQVVNSTSVA---IATSTA 1970

Query: 335  VAARSSCHQLEQLDAMLDKELALEGRAYGNDALVSG*AFATSKCPRFAWSTA-------H 493
            +A  +S H   Q +  +   + +      N A+ +  A A S     A STA       H
Sbjct: 1971 IATSTSTHVTTQTNTAVTTSVVMATSTQTNTAVTTSIAIAKSTSVVLATSTAIETKTHFH 2030

Query: 494  AVFXCYLRRASRHLHDPVSSKTTHSTMPSPK*TKTNCRKLTTIRMTHQTRVMRVLSPTVL 673
             V       ++    D ++   TH+T  +   T T+   LTT    H T     +S    
Sbjct: 2031 FVTTTKTETSTATKTDTLTHTKTHATTETKVSTATSTSVLTTTNTHHVTSTSTTVSTATK 2090

Query: 674  LKRTT 688
             + TT
Sbjct: 2091 TETTT 2095


>SB_28322| Best HMM Match : Ion_trans (HMM E-Value=1.6e-41)
          Length = 263

 Score = 29.1 bits (62), Expect = 5.1
 Identities = 20/72 (27%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
 Frame = -2

Query: 789 VHTAF-LVVC*ESARQLIKVKLNRQFEHRSNRFKFVVLFSRTVGLRTLITRVW*VILIVV 613
           V+ AF  V   E+  +LI  KLN  F    N F F+++ +  VG+   + +    +++++
Sbjct: 70  VNMAFTFVFLFEAILKLIAFKLN-YFRDYWNVFDFIIVVTTLVGVLLELVQALPYVVMLI 128

Query: 612 NFLQFVFVYFGL 577
             L FV+   G+
Sbjct: 129 AMLFFVYAVIGM 140


>SB_48526| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 81

 Score = 29.1 bits (62), Expect = 5.1
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = +2

Query: 149 PDSMATITMKPEYPPSEVYSTSEPPPAYRHRVS 247
           PD  AT  + PEY   +     +PPP Y   ++
Sbjct: 28  PDMPATFQIPPEYTVEDPIKIDQPPPPYMDTIT 60


>SB_30684| Best HMM Match : 7tm_1 (HMM E-Value=9.3e-11)
          Length = 540

 Score = 29.1 bits (62), Expect = 5.1
 Identities = 19/57 (33%), Positives = 29/57 (50%)
 Frame = +2

Query: 167 ITMKPEYPPSEVYSTSEPPPAYRHRVSTSVQIAKIAALTVVASSFILGTFILASSWV 337
           I+ K   P  E  STS     YR+RV  ++++AK  A  V+   F L T    ++W+
Sbjct: 360 ISSKNRIPVDETSSTSRGGVGYRNRVE-NIKVAKTVAAIVL--MFALCTAPFQTAWI 413


>SB_11571| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 469

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = +2

Query: 137 KEHQPDSMATITMKPEYPPSEVYSTSEPPPAYRHRVSTSVQ 259
           + H P S  + T +P  PP    +T++ PPAY  R S ++Q
Sbjct: 91  RPHTPPSCQSNTPRPLTPPPRQSNTTQ-PPAYPPRQSYALQ 130


>SB_55818| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 145

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
 Frame = +2

Query: 179 PEYPPSEVYSTSEPPPAYRHRVSTSVQIAKI---AALTVVASSFILGTFILASS 331
           P  PP       +PPPA  H +   + I  +     + ++   FI G+F L+SS
Sbjct: 92  PAPPPPPAQPAPQPPPAPPHFLPFIIIITTVIITIVINIIIIRFISGSFRLSSS 145


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,546,325
Number of Sequences: 59808
Number of extensions: 538914
Number of successful extensions: 1445
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1281
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1441
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2574115416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)