Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_F03
         (898 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U64859-1|AAC69092.2|  468|Caenorhabditis elegans Hypothetical pr...    30   2.6  
AL032637-13|CAA21615.1|  709|Caenorhabditis elegans Hypothetical...    29   4.5  

>U64859-1|AAC69092.2|  468|Caenorhabditis elegans Hypothetical
           protein R09F10.3 protein.
          Length = 468

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 21/63 (33%), Positives = 28/63 (44%)
 Frame = +2

Query: 539 DPVSSKTTHSTMPSPK*TKTNCRKLTTIRMTHQTRVMRVLSPTVLLKRTTNLKRLDRCSN 718
           DP ++ T  +T  S     +     TT   T  T   RV SPT+    T     + RC+N
Sbjct: 85  DPAATTTAATTSASTTSITSTAATTTTTTTTGTTATGRV-SPTIP-PETLFHDAIKRCNN 142

Query: 719 CLF 727
           CLF
Sbjct: 143 CLF 145


>AL032637-13|CAA21615.1|  709|Caenorhabditis elegans Hypothetical
           protein Y43F8C.14 protein.
          Length = 709

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
 Frame = +2

Query: 125 VVMEKEHQPDSMATITMKPEY--PPSEVYSTSEPPPAYRHRVSTSV 256
           +V++K   P ++AT T KP    PP      SEPPPA++    +S+
Sbjct: 275 IVVKKLQAPIALATSTPKPAMCRPPKH----SEPPPAFQDSFVSSI 316


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,371,887
Number of Sequences: 27780
Number of extensions: 396722
Number of successful extensions: 1278
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1224
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1277
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2276333906
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)