Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_F03
         (898 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g11620.1 68415.m01249 hypothetical protein                          31   1.4  
At5g46870.1 68418.m05775 RNA recognition motif (RRM)-containing ...    30   1.8  
At5g13730.1 68418.m01598 RNA polymerase sigma subunit SigD (sigD...    30   2.4  
At5g46520.1 68418.m05728 disease resistance protein (TIR-NBS-LRR...    29   5.5  
At1g59660.1 68414.m06710 nucleoporin family protein contains Pfa...    28   7.3  
At1g44820.1 68414.m05134 aminoacylase, putative / N-acyl-L-amino...    28   7.3  
At5g55690.1 68418.m06943 MADS-box protein (AGL47)                      28   9.7  

>At2g11620.1 68415.m01249 hypothetical protein 
          Length = 491

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = +2

Query: 128 VMEKEHQPDSMATITMKPEYPPSEVYSTSEPPPAYRHRVS 247
           V+  +   + M  + MKPE PP ++Y   +P P  +   S
Sbjct: 253 VLRYDGNNNGMQGVLMKPEKPPQDLYGQCQPQPQIQRNFS 292


>At5g46870.1 68418.m05775 RNA recognition motif (RRM)-containing
           protein similar to unknown protein (pir||C71447)
          Length = 295

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 20/76 (26%), Positives = 30/76 (39%), Gaps = 2/76 (2%)
 Frame = +2

Query: 152 DSMATITMKPEY--PPSEVYSTSEPPPAYRHRVSTSVQIAKIAALTVVASSFILGTFILA 325
           DS  T+TM P+Y  PP  + S      + +    T   ++       V S  I   F+L 
Sbjct: 68  DSSVTVTMSPDYQLPPDALASIESLKESNKSSSPTREDVSVFRKAEDVVSGMISKGFVLG 127

Query: 326 SSWVAARSSCHQLEQL 373
              +A   S  +  QL
Sbjct: 128 KDAIAKAKSLDEKHQL 143


>At5g13730.1 68418.m01598 RNA polymerase sigma subunit SigD (sigD) /
           sigma-like factor (SIG4) identical to RNA polymerase
           sigma subunit SigD [Arabidopsis thaliana] GI:4972296,
           sigma-like factor [Arabidopsis thaliana] GI:3983260;
           contains Pfam profiles PF04545: Sigma-70, region 4,
           PF04539: Sigma-70 region 3, PF04542: Sigma-70 region 2
          Length = 419

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = +2

Query: 554 KTTHSTMPSPK*TKTNCRKLTTIRMTHQTRVMRVLSPTVLLK 679
           +TTH   PSP  +     KL+T  +   T V RV+  +V++K
Sbjct: 27  RTTHQCQPSPSLSSPFSIKLSTALVCGDTTVDRVVDSSVMIK 68


>At5g46520.1 68418.m05728 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1298

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 16/37 (43%), Positives = 22/37 (59%)
 Frame = +2

Query: 221 PPAYRHRVSTSVQIAKIAALTVVASSFILGTFILASS 331
           PP   H +S S+ + KI+   V  SSF+L T  +ASS
Sbjct: 7   PPRQTHYLS-SISLLKISISKVFVSSFLLLTLSMASS 42


>At1g59660.1 68414.m06710 nucleoporin family protein contains Pfam
           profiles: PF04096 nucleoporin autopeptidase, PF03093
           nucleoporin FG repeat family
          Length = 997

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +2

Query: 407 GRAYGNDALVSG*AFATSKCPRFAWSTAHA 496
           G A+GN+   SG AF +S  P F  S   A
Sbjct: 240 GNAFGNNTFSSGGAFGSSSTPTFGASNTSA 269


>At1g44820.1 68414.m05134 aminoacylase, putative /
           N-acyl-L-amino-acid amidohydrolase, putative similar to
           aminoacylase-1 (N-acyl-L-amino-acid amidohydrolase
           ACY-1)[Homo sapiens] SWISS-PROT:Q03154
          Length = 438

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 14/47 (29%), Positives = 23/47 (48%)
 Frame = +2

Query: 203 YSTSEPPPAYRHRVSTSVQIAKIAALTVVASSFILGTFILASSWVAA 343
           ++T+ P P Y   +S  +  A+   LT     FI G  IL  +W+ +
Sbjct: 39  FNTAHPNPNYTAPISFLINQAQSIGLTTKTIEFISGKPILLITWLGS 85


>At5g55690.1 68418.m06943 MADS-box protein (AGL47) 
          Length = 277

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
 Frame = +2

Query: 596 TNCRKLTTIRMTHQTRVMRVLSPTVLLKRTTNLKRLDRCS-NCLFSL 733
           ++C K  T++   +    +V  PT+  K  T  K+LD+CS N L+++
Sbjct: 84  SSCTKTYTVQECLEKNNTKVEKPTIATKYPTWDKKLDQCSLNDLYAV 130


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,405,232
Number of Sequences: 28952
Number of extensions: 375242
Number of successful extensions: 1506
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1089
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1497
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2110422216
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)