Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_F02
         (888 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8042| Best HMM Match : DUF803 (HMM E-Value=0)                      107   9e-24
SB_53793| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.0  
SB_43562| Best HMM Match : Oxidored_q2 (HMM E-Value=3.5)               29   6.6  
SB_33678| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.6  
SB_10446| Best HMM Match : Exo_endo_phos (HMM E-Value=6.6e-20)         28   8.8  
SB_27526| Best HMM Match : 7tm_1 (HMM E-Value=1.2e-08)                 28   8.8  

>SB_8042| Best HMM Match : DUF803 (HMM E-Value=0)
          Length = 603

 Score =  107 bits (258), Expect = 9e-24
 Identities = 54/145 (37%), Positives = 81/145 (55%)
 Frame = +1

Query: 451 VTPLGXXXXXXXXXXXXKFLNEKLNFMGKIACFLCIIGSIVFVIHSPKSEEIKNFSEVVN 630
           VTPLG             FL+EK N  GK+ C L IIGS V VIH+P+ E +    ++ +
Sbjct: 328 VTPLGALSVLVSAVLASYFLDEKQNLHGKVGCILSIIGSTVLVIHAPQEEAVDTIEQLES 387

Query: 631 MLCEFLFISYMATVLLMCFIIKIVFVPKFGNTNITLYLLLCXAIGSLTVVFCKAVALGIK 810
            L E  FI Y   V+L+ F++   + PK+G TNI +Y+ +C  IGSL+V+ CK V + +K
Sbjct: 388 KLIEPGFIIYAVMVVLLAFVLIWRYAPKYGKTNILVYIAICSLIGSLSVMGCKGVGIVLK 447

Query: 811 EFVTSGVNNLVNFYFWLLIVSAIIC 885
           +    G + + N   W L+ + + C
Sbjct: 448 Q-TLKGDSQVGNPVSWALLFTVLTC 471


>SB_53793| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 833

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +3

Query: 684 LYNQNSVCAKVWKYKYYFILIAMXCYWEF 770
           +Y + +      KYKY+ IL A+  YW F
Sbjct: 2   MYIERTTSVNATKYKYFRILDAVLLYWRF 30


>SB_43562| Best HMM Match : Oxidored_q2 (HMM E-Value=3.5)
          Length = 128

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 19/86 (22%), Positives = 42/86 (48%), Gaps = 4/86 (4%)
 Frame = +1

Query: 556 IIGSIVFVIHSPKSEEIKNFSE-VVNMLCEFLFISYMATV---LLMCFIIKIVFVPKFGN 723
           +I + +F+    +++ +KN +    N L   L +S + TV   ++M F I +++  +   
Sbjct: 26  LIENSLFINIVSRNQRMKNATNYATNYLIVNLAVSELVTVCTTMVMTFYIALIYPKRMDY 85

Query: 724 TNITLYLLLCXAIGSLTVVFCKAVAL 801
            N     ++C    +   VFC ++A+
Sbjct: 86  LNQVFATVICKFFIAFLDVFCHSLAM 111


>SB_33678| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1308

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = +3

Query: 543 LFSMYYWINCICYSFS 590
           +F++YY+  C CY+FS
Sbjct: 593 MFALYYYCRCCCYNFS 608


>SB_10446| Best HMM Match : Exo_endo_phos (HMM E-Value=6.6e-20)
          Length = 1285

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +3

Query: 288 KKASVEKDNSFRKCKSCSRR 347
           K+ SV+ +NSFR+ K CS R
Sbjct: 397 KELSVDSENSFRESKRCSHR 416


>SB_27526| Best HMM Match : 7tm_1 (HMM E-Value=1.2e-08)
          Length = 326

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 13/46 (28%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
 Frame = -2

Query: 374 HIH-CFKYAKPPAAALTFPEAIIFFNASFFIMKLEPMKILDEIARP 240
           H H C  Y KPP  + +    ++     FF+     + +  +IARP
Sbjct: 109 HFHSCLPYLKPPNTSFSRVTNLLLITCCFFVPLTATLVLYCKIARP 154


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,722,580
Number of Sequences: 59808
Number of extensions: 362352
Number of successful extensions: 740
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 698
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 740
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2538363813
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)