Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_F02
         (888 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g34470.1 68414.m04283 permease-related low similarity to puri...   135   4e-32
At4g13800.1 68417.m02139 permease-related contains 9 predicted t...   132   4e-31
At3g23870.1 68416.m03000 permease-related low similarity to puri...   131   5e-31
At4g09640.1 68417.m01584 expressed protein several hypothetical ...   130   9e-31
At1g71900.1 68414.m08312 expressed protein                            129   3e-30
At2g21120.1 68415.m02506 expressed protein                            126   2e-29
At4g38730.1 68417.m05486 expressed protein                            118   5e-27
At3g03720.1 68416.m00377 amino acid permease family protein simi...    29   5.4  
At1g56120.1 68414.m06444 leucine-rich repeat family protein / pr...    29   5.4  
At3g21580.2 68416.m02722 expressed protein                             28   7.2  

>At1g34470.1 68414.m04283 permease-related low similarity to purine
           permease [Arabidopsis thaliana] GI:7620007
          Length = 368

 Score =  135 bits (326), Expect = 4e-32
 Identities = 62/190 (32%), Positives = 108/190 (56%)
 Frame = +1

Query: 319 SGNVRAAAGGFAYLKQWMWWLGLITMSIGEXXXXXXXXXXXXXXVTPLGXXXXXXXXXXX 498
           +  +RA +GG++YL + +WW+G+ITM +GE              VTPLG           
Sbjct: 49  ASGLRAGSGGYSYLLEPLWWVGMITMIVGEIANFAAYAFAPAILVTPLGALSIIISAALA 108

Query: 499 XKFLNEKLNFMGKIACFLCIIGSIVFVIHSPKSEEIKNFSEVVNMLCEFLFISYMATVLL 678
              L+EKL+  G + C LC++GSI  V+H+P+ +EI +  +V N+  E  F+ Y A V+ 
Sbjct: 109 HVILHEKLHTFGLLGCVLCVVGSITIVLHAPQEQEIDSVLQVWNLATEPAFLLYAAAVVG 168

Query: 679 MCFIIKIVFVPKFGNTNITLYLLLCXAIGSLTVVFCKAVALGIKEFVTSGVNNLVNFYFW 858
              I+ + FVP++G +++ +Y+ +C  +GSL+V+  KA+ + +K    SG+N L+    W
Sbjct: 169 AAIILIVQFVPQYGQSHVMVYIGVCSLVGSLSVMSVKALGIALK-LTFSGMNQLIYPQTW 227

Query: 859 LLIVSAIICI 888
           +  +  + C+
Sbjct: 228 VFTLIVLTCV 237


>At4g13800.1 68417.m02139 permease-related contains 9 predicted
           transmembrane domains; contains Pfam PF05653: Protein of
           unknown function (DUF803); identified as COG0697,
           Permeases of the drug/metabolite transporter (DMT)
           superfamily
          Length = 336

 Score =  132 bits (318), Expect = 4e-31
 Identities = 64/185 (34%), Positives = 100/185 (54%)
 Frame = +1

Query: 331 RAAAGGFAYLKQWMWWLGLITMSIGEXXXXXXXXXXXXXXVTPLGXXXXXXXXXXXXKFL 510
           RA  GG+ YL +  WW G+ITM +GE              VTPLG              L
Sbjct: 42  RAGEGGYGYLYEPWWWAGMITMIVGEIANFAAYAFAPAILVTPLGALSIIFSAVLAHFIL 101

Query: 511 NEKLNFMGKIACFLCIIGSIVFVIHSPKSEEIKNFSEVVNMLCEFLFISYMATVLLMCFI 690
            EKL+  G + C LC++GS   V+H+P  + I++  +V ++  E  F++Y A VL++   
Sbjct: 102 EEKLHMFGILGCVLCVVGSTTIVLHAPHEQGIESVKQVWHLATEPGFLAYSAVVLVVVLA 161

Query: 691 IKIVFVPKFGNTNITLYLLLCXAIGSLTVVFCKAVALGIKEFVTSGVNNLVNFYFWLLIV 870
           +   + P++G T++ +Y+ +C  +GSLTV+  KAVA+ IK    SG+N    F+ W+ I+
Sbjct: 162 LIFYYEPRYGKTHMIVYVGICSLMGSLTVMSVKAVAIAIK-LTFSGMNQFKYFHAWIFII 220

Query: 871 SAIIC 885
              IC
Sbjct: 221 VVTIC 225


>At3g23870.1 68416.m03000 permease-related low similarity to purine
           permease [Arabidopsis thaliana] GI:7620007; contains 9
           predicted transmembrane domains; contains Pfam PF05653:
           Protein of unknown function (DUF803); identified as
           COG0697, Permeases of the drug/metabolite transporter
           (DMT) superfamily
          Length = 335

 Score =  131 bits (317), Expect = 5e-31
 Identities = 63/189 (33%), Positives = 100/189 (52%)
 Frame = +1

Query: 319 SGNVRAAAGGFAYLKQWMWWLGLITMSIGEXXXXXXXXXXXXXXVTPLGXXXXXXXXXXX 498
           +  VRA  GG+ YLK+  WW G+ITM +GE              VTPLG           
Sbjct: 38  ASGVRAGEGGYGYLKEPWWWAGMITMIVGEVANFAAYAFAPAILVTPLGALSIIFSAVLA 97

Query: 499 XKFLNEKLNFMGKIACFLCIIGSIVFVIHSPKSEEIKNFSEVVNMLCEFLFISYMATVLL 678
              L EKL+  G + C LC++GS   V+H+P  ++I++  ++  +  E  F+ Y A +++
Sbjct: 98  HFILKEKLHMFGILGCILCVVGSTTIVLHAPHEQKIESVKQIWQLAIEPGFLVYSAVIVI 157

Query: 679 MCFIIKIVFVPKFGNTNITLYLLLCXAIGSLTVVFCKAVALGIKEFVTSGVNNLVNFYFW 858
           +  I+   + P++G T++ +Y+ +C  +GSLTV+  KAVA+ IK    SG N    F  W
Sbjct: 158 VVAILIFYYEPRYGKTHMIVYVGICSLMGSLTVMSVKAVAIAIK-LTFSGTNQFKYFNTW 216

Query: 859 LLIVSAIIC 885
           + I+    C
Sbjct: 217 IFILVVATC 225


>At4g09640.1 68417.m01584 expressed protein several hypothetical
           proteins - Arabidopsis thaliana
          Length = 386

 Score =  130 bits (315), Expect = 9e-31
 Identities = 62/190 (32%), Positives = 104/190 (54%)
 Frame = +1

Query: 319 SGNVRAAAGGFAYLKQWMWWLGLITMSIGEXXXXXXXXXXXXXXVTPLGXXXXXXXXXXX 498
           +  +RA +GG++YL + +WW+G+ITM +GE              VTPLG           
Sbjct: 49  ASGLRAGSGGYSYLLEPLWWIGMITMIVGEIANFAAYAFAPAILVTPLGALSIIISASLA 108

Query: 499 XKFLNEKLNFMGKIACFLCIIGSIVFVIHSPKSEEIKNFSEVVNMLCEFLFISYMATVLL 678
              L EKL+  G + C LCI+GS+  V+H+P+ ++I +  EV N+  E  F+ Y A V+ 
Sbjct: 109 HIILQEKLHTFGILGCALCIVGSVTIVLHAPQEQDIVSVLEVWNLATEPAFLFYAAAVVG 168

Query: 679 MCFIIKIVFVPKFGNTNITLYLLLCXAIGSLTVVFCKAVALGIKEFVTSGVNNLVNFYFW 858
              ++ + F+P +G +++ +Y+ +C  IGSL+V+  KA+ + +K    SG N L     W
Sbjct: 169 AAIVLIVQFIPLYGQSHVMVYIGVCSLIGSLSVMSVKALGIALK-LTFSGTNQLGYPQTW 227

Query: 859 LLIVSAIICI 888
           +  V  + C+
Sbjct: 228 VFTVIVLFCV 237


>At1g71900.1 68414.m08312 expressed protein
          Length = 343

 Score =  129 bits (311), Expect = 3e-30
 Identities = 63/190 (33%), Positives = 99/190 (52%)
 Frame = +1

Query: 319 SGNVRAAAGGFAYLKQWMWWLGLITMSIGEXXXXXXXXXXXXXXVTPLGXXXXXXXXXXX 498
           S   RA  GG++YL + +WW+G+ TM +GE              VTPLG           
Sbjct: 49  STGTRAGVGGYSYLYEPLWWIGMTTMLLGEIANFAAYAFAPAILVTPLGAVSIIISAVLA 108

Query: 499 XKFLNEKLNFMGKIACFLCIIGSIVFVIHSPKSEEIKNFSEVVNMLCEFLFISYMATVLL 678
              L EKL+  G + C LC++GS   V+H+P+  EI +  EV N+  E  F+ Y + V+ 
Sbjct: 109 HIILREKLHIFGILGCALCVVGSTTIVLHAPQEREIDSVIEVWNLATEPAFMFYASLVIG 168

Query: 679 MCFIIKIVFVPKFGNTNITLYLLLCXAIGSLTVVFCKAVALGIKEFVTSGVNNLVNFYFW 858
               + I FVP++G TN+ +Y+ +C  +GSL+V+  KA+ + +K    SG N L     W
Sbjct: 169 AAVFLIIRFVPQYGQTNVMVYIGICSLVGSLSVMSVKALGIALK-LTFSGTNQLFYPQTW 227

Query: 859 LLIVSAIICI 888
           +  +  + C+
Sbjct: 228 IFTLVVLTCV 237


>At2g21120.1 68415.m02506 expressed protein 
          Length = 328

 Score =  126 bits (304), Expect = 2e-29
 Identities = 62/186 (33%), Positives = 97/186 (52%)
 Frame = +1

Query: 331 RAAAGGFAYLKQWMWWLGLITMSIGEXXXXXXXXXXXXXXVTPLGXXXXXXXXXXXXKFL 510
           RA  GG+ YL + +WW G++TM +GE              VTPLG              L
Sbjct: 39  RAGYGGYTYLLEPLWWAGMVTMIVGEAANFVAYIYAPAVLVTPLGALSIIISAVLAHFLL 98

Query: 511 NEKLNFMGKIACFLCIIGSIVFVIHSPKSEEIKNFSEVVNMLCEFLFISYMATVLLMCFI 690
            EKL  MG + C  CI+GS+V VIH+PK +   +  E+ N+  +  F+ Y+A  + +   
Sbjct: 99  KEKLKKMGVLGCVSCIVGSVVIVIHAPKEQTPNSVEEIWNLATQPAFLIYVAITMSIVLA 158

Query: 691 IKIVFVPKFGNTNITLYLLLCXAIGSLTVVFCKAVALGIKEFVTSGVNNLVNFYFWLLIV 870
           + + F P  G TNI +Y+ +C  +G+LTV+  KA+ + IK     GV+ +     WL ++
Sbjct: 159 LILHFEPLCGQTNILVYIGICSLMGALTVMSIKAIGIAIK-LTMEGVSQIGYPQTWLFVM 217

Query: 871 SAIICI 888
            A+ C+
Sbjct: 218 VAVTCV 223


>At4g38730.1 68417.m05486 expressed protein
          Length = 326

 Score =  118 bits (284), Expect = 5e-27
 Identities = 61/190 (32%), Positives = 95/190 (50%)
 Frame = +1

Query: 319 SGNVRAAAGGFAYLKQWMWWLGLITMSIGEXXXXXXXXXXXXXXVTPLGXXXXXXXXXXX 498
           +   RA  GG+ YL + +WW+GL+TM+ GE              VTPLG           
Sbjct: 35  ANGTRAGFGGYTYLLEPLWWVGLVTMTFGEIANFVAYVYAPAVLVTPLGALSIIISAVLA 94

Query: 499 XKFLNEKLNFMGKIACFLCIIGSIVFVIHSPKSEEIKNFSEVVNMLCEFLFISYMATVLL 678
              L+EKL  MG   C  CI+GS++ VIH+P+ +   +  E+  +  +  F+ Y+A  + 
Sbjct: 95  HFLLDEKLRKMGVWGCVCCIVGSVMIVIHAPQEQTPNSVEEIWKLAMQPAFLIYVAISMS 154

Query: 679 MCFIIKIVFVPKFGNTNITLYLLLCXAIGSLTVVFCKAVALGIKEFVTSGVNNLVNFYFW 858
           +   + +   P  G TNI +Y+ +C  +GSLTV+  KAV + IK     G+N +     W
Sbjct: 155 IVLALILYCEPLCGQTNILVYIGICSLMGSLTVMSIKAVGIAIK-LTFEGINQIWYPETW 213

Query: 859 LLIVSAIICI 888
              + A IC+
Sbjct: 214 FFAMVAAICV 223


>At3g03720.1 68416.m00377 amino acid permease family protein similar
           to cationic amino acid transporter-1 [Rattus norvegicus]
           GI:1589917; contains Pfam profile PF00324: Amino acid
           permease
          Length = 600

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 18/76 (23%), Positives = 36/76 (47%)
 Frame = +1

Query: 556 IIGSIVFVIHSPKSEEIKNFSEVVNMLCEFLFISYMATVLLMCFIIKIVFVPKFGNTNIT 735
           ++GS++ + +  + EE  NF      LC   F+ Y+    ++C +I    +   G     
Sbjct: 503 LLGSLITLGYIDEDEERHNFGHKGGFLCP--FVPYLP---VLCILINTYLIINIG-AGTW 556

Query: 736 LYLLLCXAIGSLTVVF 783
           + +L+   IGS+  +F
Sbjct: 557 IRVLIWLLIGSMIYIF 572


>At1g56120.1 68414.m06444 leucine-rich repeat family protein /
           protein kinase family protein contains Pfam domains
           PF00560: Leucine Rich Repeat and PF00069: Protein kinase
           domain
          Length = 1045

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +3

Query: 711 KVWKYKYYFILIAMXCYWEFD 773
           ++W   Y   L+ + CYWEFD
Sbjct: 93  ELWTLTYLTNLLTVSCYWEFD 113


>At3g21580.2 68416.m02722 expressed protein
          Length = 384

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 15/44 (34%), Positives = 25/44 (56%)
 Frame = +1

Query: 649 FISYMATVLLMCFIIKIVFVPKFGNTNITLYLLLCXAIGSLTVV 780
           FIS   T L   +++ +V +P   N  + L L+LC A+ S+ V+
Sbjct: 104 FISSPVTFLHSVWLLTLVVLPARANLVVRLGLVLCTALLSILVL 147


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,652,565
Number of Sequences: 28952
Number of extensions: 258004
Number of successful extensions: 616
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 600
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 614
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2081245872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)