Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_E23
         (901 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC7D4.07c |trx1||cytosolic thioredoxin Trx1 |Schizosaccharomyc...    72   1e-13
SPBC12D12.07c |trx2||mitochondrial thioredoxin Trx2|Schizosaccha...    57   4e-09
SPBC577.08c |txl1|trx3|thioredoxin-like I protein Txl1|Schizosac...    56   7e-09
SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces po...    52   1e-07
SPBC26H8.06 |grx4||glutaredoxin Grx4|Schizosaccharomyces pombe|c...    47   3e-06
SPAC17H9.14c |||protein disulfide isomerase|Schizosaccharomyces ...    42   1e-04
SPAC13F5.05 |||thioredoxin family protein|Schizosaccharomyces po...    32   0.13 
SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces ...    29   0.68 
SPAC29E6.06c ||SPAC30.10c|cysteine-tRNA ligase |Schizosaccharomy...    27   3.6  

>SPAC7D4.07c |trx1||cytosolic thioredoxin Trx1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 103

 Score = 72.1 bits (169), Expect = 1e-13
 Identities = 34/90 (37%), Positives = 51/90 (56%)
 Frame = +3

Query: 162 IKDSDDLKTRLAEAGDKLVVIDFMATWCGPCKMIGPKLDEIAAEMXXXXXXXXXXXXXXX 341
           + DS + K+ + +  DKLVV+DF ATWCGPCK I PK ++  +                 
Sbjct: 5   VSDSSEFKSIVCQ--DKLVVVDFFATWCGPCKAIAPKFEQF-SNTYSDATFIKVDVDQLS 61

Query: 342 XXASEYNINSMPTFVFVKNGKKLDEFSGAN 431
             A+E  +++MP+F   KNG+K++E  GAN
Sbjct: 62  EIAAEAGVHAMPSFFLYKNGEKIEEIVGAN 91


>SPBC12D12.07c |trx2||mitochondrial thioredoxin
           Trx2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 121

 Score = 56.8 bits (131), Expect = 4e-09
 Identities = 28/91 (30%), Positives = 47/91 (51%)
 Frame = +3

Query: 162 IKDSDDLKTRLAEAGDKLVVIDFMATWCGPCKMIGPKLDEIAAEMXXXXXXXXXXXXXXX 341
           ++   D  TR++   DK+ V+DF A WCGPCK + P L+++ +E                
Sbjct: 22  VESFGDYNTRIS--ADKVTVVDFYADWCGPCKYLKPFLEKL-SEQNQKASFIAVNADKFS 78

Query: 342 XXASEYNINSMPTFVFVKNGKKLDEFSGANV 434
             A +  + ++PT V  + G++LD   GA+V
Sbjct: 79  DIAQKNGVYALPTMVLFRKGQELDRIVGADV 109


>SPBC577.08c |txl1|trx3|thioredoxin-like I protein
           Txl1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 290

 Score = 56.0 bits (129), Expect = 7e-09
 Identities = 26/73 (35%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
 Frame = +3

Query: 216 VVIDFMATWCGPCKMIGPKLDEIAAEMXXXXXXXXXXXXXXXXX-ASEYNINSMPTFVFV 392
           + +D  A WCGPCK I P   ++A++                   AS   + +MPTFVF 
Sbjct: 22  LAVDCYADWCGPCKAISPLFSQLASKYASPKFVFAKVNVDEQRQIASGLGVKAMPTFVFF 81

Query: 393 KNGKKLDEFSGAN 431
           +NGK++D  +GAN
Sbjct: 82  ENGKQIDMLTGAN 94


>SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 492

 Score = 52.0 bits (119), Expect = 1e-07
 Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
 Frame = +3

Query: 207 DKLVVIDFMATWCGPCKMIGPKLDEIAAEM-XXXXXXXXXXXXXXXXXASEYNINSMPTF 383
           DK++++ F A WCG CK + P+ +  A E+                   SEY+I   PT 
Sbjct: 39  DKVLMVKFYAPWCGHCKALAPEYESAADELEKDGISLVEVDCTEEGDLCSEYSIRGYPTL 98

Query: 384 VFVKNGKKLDEFSG 425
              KNGK++ ++SG
Sbjct: 99  NVFKNGKQISQYSG 112



 Score = 36.7 bits (81), Expect = 0.004
 Identities = 19/68 (27%), Positives = 31/68 (45%)
 Frame = +3

Query: 210 KLVVIDFMATWCGPCKMIGPKLDEIAAEMXXXXXXXXXXXXXXXXXASEYNINSMPTFVF 389
           K V+++F A WCG CK + P  +++A E                   S  +I+  PT +F
Sbjct: 374 KDVLVEFYAPWCGHCKNLAPTYEKLAEEYSDDSNVVVAKIDATENDIS-VSISGFPTIMF 432

Query: 390 VKNGKKLD 413
            K   K++
Sbjct: 433 FKANDKVN 440


>SPBC26H8.06 |grx4||glutaredoxin Grx4|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 244

 Score = 47.2 bits (107), Expect = 3e-06
 Identities = 23/94 (24%), Positives = 42/94 (44%)
 Frame = +3

Query: 150 MSIHIKDSDDLKTRLAEAGDKLVVIDFMATWCGPCKMIGPKLDEIAAEMXXXXXXXXXXX 329
           MS+ I   +  +  L    +++++++F A W  PCK +    D+ A +            
Sbjct: 1   MSVEITFVEQFQEILQNGKEQIILLNFYAPWAAPCKQMNQVFDQFAKD-TKNAVFLKIEA 59

Query: 330 XXXXXXASEYNINSMPTFVFVKNGKKLDEFSGAN 431
                 A  +++N++P FV +   K L   SGAN
Sbjct: 60  EKFSDIAESFDVNAVPLFVLIHGAKVLARISGAN 93


>SPAC17H9.14c |||protein disulfide isomerase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 359

 Score = 41.9 bits (94), Expect = 1e-04
 Identities = 25/94 (26%), Positives = 44/94 (46%), Gaps = 3/94 (3%)
 Frame = +3

Query: 156 IHIKDSDDLKTRLAEAGDKLVVIDFMATWCGPCKMIGPKLDEIAA--EMXXXXXXXXXXX 329
           + ++  ++L+  +  A  K  +I+F ATWCG CK + P  +E+ A  E            
Sbjct: 23  VELQSLNELENTI-RASKKGALIEFYATWCGHCKSLAPVYEELGALFEDHNDVLIGKIDA 81

Query: 330 XXXXXXASEYNINSMPTFV-FVKNGKKLDEFSGA 428
                 A +Y+I   PT + F  +G +  ++S A
Sbjct: 82  DTHSDVADKYHITGFPTLIWFPPDGSEPVQYSNA 115



 Score = 30.3 bits (65), Expect = 0.39
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +3

Query: 210 KLVVIDFMATWCGPCKMIGPKLDEI 284
           K V+++F A WCG CK + P  + +
Sbjct: 159 KDVLVEFYADWCGYCKRLAPTYETL 183


>SPAC13F5.05 |||thioredoxin family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 363

 Score = 31.9 bits (69), Expect = 0.13
 Identities = 22/90 (24%), Positives = 34/90 (37%), Gaps = 2/90 (2%)
 Frame = +3

Query: 168 DSDDLKTRLAEAGDKLVVIDFMATWCGPCKMIGPKLDEIAAEMXXXXXXXXXXXXXXXXX 347
           +S + +  +   G  LVV  F A WCG CK + P   ++A+ +                 
Sbjct: 37  NSKNFRKFVKAKGPSLVV--FYAPWCGYCKKLVPTYQKLASNLHSLLPVTAVDCDADQNR 94

Query: 348 A--SEYNINSMPTFVFVKNGKKLDEFSGAN 431
           A  S+Y +   PT   V    K    S  +
Sbjct: 95  AVCSQYQVQGFPTIKLVYPSSKGSSLSSTD 124


>SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 726

 Score = 29.5 bits (63), Expect = 0.68
 Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 3/61 (4%)
 Frame = +3

Query: 243 CGPCKMIGPKLD---EIAAEMXXXXXXXXXXXXXXXXXASEYNINSMPTFVFVKNGKKLD 413
           CG CK +GP  D   E A E                  +S  NI ++PT    +NG+ ++
Sbjct: 54  CGACKRLGPMWDNMVEKAKEQVEGSNFHFGEVDCSKELSSCANIRAVPTLYLYQNGEIVE 113

Query: 414 E 416
           E
Sbjct: 114 E 114


>SPAC29E6.06c ||SPAC30.10c|cysteine-tRNA ligase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 754

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 12/46 (26%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
 Frame = -3

Query: 173 GIFDVNGHLGQ--DKLKLKIISQFKMQIRNTQVTTYSQFGAKLITQ 42
           G+    GH+ +  DKL+++++ +F+   +NT +     F   L+ Q
Sbjct: 477 GVSANGGHVPEKFDKLEIELLEKFQQTQQNTHLALCDSFNTPLVMQ 522


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,836,882
Number of Sequences: 5004
Number of extensions: 52667
Number of successful extensions: 139
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 454497130
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)