Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_E22
         (883 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual        31   0.29 
SPAC589.04 |||metaxin 1|Schizosaccharomyces pombe|chr 1|||Manual       29   0.66 
SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi...    27   4.7  
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy...    27   4.7  
SPAC2F7.15 |rsm24||mitochondrial ribosomal protein subunit S24|S...    26   8.2  

>SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1279

 Score = 30.7 bits (66), Expect = 0.29
 Identities = 19/54 (35%), Positives = 29/54 (53%)
 Frame = -1

Query: 403 FRGLASFTGISNKFVFTLTAEQCSDNLYAGTNVSLSREKKPFACKRRACSVRPT 242
           F  L S TG S   + +   +  S+   AG++ S+SR+K PF+   RA S + T
Sbjct: 87  FPTLLSKTGPSKPRIVSWVRKTASNTSVAGSD-SVSRDKIPFSASSRASSTKST 139


>SPAC589.04 |||metaxin 1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 271

 Score = 29.5 bits (63), Expect = 0.66
 Identities = 15/46 (32%), Positives = 26/46 (56%)
 Frame = -1

Query: 211 ESYESRTKKTLSCWPASNSSASLDVIPPQYQP*FQFAS*NFIFLNV 74
           E Y+++T   L+ W +  +S +LDV   Q+Q   +    + +FLNV
Sbjct: 32  EDYKTKTVMYLTMWNSDLNSEALDVNSLQWQTWAKLNDPSIVFLNV 77


>SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein
            Urb1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1568

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = -1

Query: 358  FTLTAEQCSDNLYAGTNVSLSREKKPFACKRRACSVRPT 242
            FT+TAEQC  + +    + L+ EK P A +  +  ++ T
Sbjct: 1167 FTMTAEQCDSSRF--LQMILAHEKNPLAGEDSSDEIKAT 1203


>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2052

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = +3

Query: 435  ICRFVIRQTGSSNTWAKLPLPPNLISYISMGSDYIIP*LSRV 560
            +C+ V+   GSSN    L    NL+  +S+   Y +P L RV
Sbjct: 1775 LCKNVLLWCGSSNNIEILDDESNLLRLMSLVEKYSLPFLRRV 1816


>SPAC2F7.15 |rsm24||mitochondrial ribosomal protein subunit
           S24|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 258

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 17/66 (25%), Positives = 33/66 (50%), Gaps = 4/66 (6%)
 Frame = -2

Query: 345 QNNVQIIYMLAQMFHY----LEKKSHLHVKDVHAVYGQHNEKKRRECVWSHTSLGLKKRC 178
           QN   +I +L  +        EK SH+ +   H  Y + +++  +E +   T+L  KK+ 
Sbjct: 178 QNKYHLIKILTSLIEESKRNAEKFSHVPLNTGHWKYKKCDKRMPQEWLADATTLTSKKKT 237

Query: 177 HVGQQA 160
            +G+Q+
Sbjct: 238 TIGKQS 243


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,495,121
Number of Sequences: 5004
Number of extensions: 75268
Number of successful extensions: 161
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)