Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_E22
         (883 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g17280.1 68416.m02209 F-box family protein contains Pfam PF00...    29   3.1  
At1g53200.2 68414.m06029 expressed protein                             29   3.1  
At1g53200.1 68414.m06030 expressed protein                             29   3.1  

>At3g17280.1 68416.m02209 F-box family protein contains Pfam
           PF00646: F-box domain; contains TIGRFAM TIGR01640: F-box
           protein interaction domain
          Length = 386

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = -1

Query: 352 LTAEQCSDNLYAGTNVSLSREKKPFACKRRACSVRPTQRKETQRM 218
           L  E   DNL + T+  L  EKK   C    CS   T+ ++ +R+
Sbjct: 297 LVEELADDNLPSVTSFLLDEEKKVAVCSDAVCSDTDTEDEDRRRI 341


>At1g53200.2 68414.m06029 expressed protein
          Length = 474

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 27/91 (29%), Positives = 41/91 (45%)
 Frame = -1

Query: 412 ANLFRGLASFTGISNKFVFTLTAEQCSDNLYAGTNVSLSREKKPFACKRRACSVRPTQRK 233
           ANLF G++ +    NKF+  L  E   DN  + +N+S S       C  R  SV     +
Sbjct: 55  ANLFIGISFYKMWCNKFLKELQPEDADDN-GSVSNISESGSGSLVECSGRDESVCSLASE 113

Query: 232 ETQRMCLESYESRTKKTLSCWPASNSSASLD 140
            + R   E+   + KK +S    S+S   +D
Sbjct: 114 VSARKDSETSVMKNKK-VSHLSISDSETRMD 143


>At1g53200.1 68414.m06030 expressed protein
          Length = 613

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 27/91 (29%), Positives = 41/91 (45%)
 Frame = -1

Query: 412 ANLFRGLASFTGISNKFVFTLTAEQCSDNLYAGTNVSLSREKKPFACKRRACSVRPTQRK 233
           ANLF G++ +    NKF+  L  E   DN  + +N+S S       C  R  SV     +
Sbjct: 194 ANLFIGISFYKMWCNKFLKELQPEDADDN-GSVSNISESGSGSLVECSGRDESVCSLASE 252

Query: 232 ETQRMCLESYESRTKKTLSCWPASNSSASLD 140
            + R   E+   + KK +S    S+S   +D
Sbjct: 253 VSARKDSETSVMKNKK-VSHLSISDSETRMD 282


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,417,842
Number of Sequences: 28952
Number of extensions: 361182
Number of successful extensions: 718
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 698
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 717
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2077687200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)