Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_E21
         (877 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_6324| Best HMM Match : MCM (HMM E-Value=0)                         150   2e-36
SB_56664| Best HMM Match : bZIP_1 (HMM E-Value=0.00033)                48   1e-05
SB_43377| Best HMM Match : No HMM Matches (HMM E-Value=.)              43   4e-04
SB_53807| Best HMM Match : MCM (HMM E-Value=0)                         35   0.099
SB_18027| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.30 
SB_49427| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.53 
SB_38304| Best HMM Match : TPR_MLP1_2 (HMM E-Value=0.39)               30   2.8  
SB_36542| Best HMM Match : Pox_A_type_inc (HMM E-Value=7.3e-11)        30   2.8  
SB_11005| Best HMM Match : SspH (HMM E-Value=0.85)                     29   3.7  
SB_57| Best HMM Match : zf-C2H2 (HMM E-Value=0)                        29   3.7  
SB_53502| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.5  
SB_12515| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.5  
SB_11299| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.5  
SB_11157| Best HMM Match : NUC173 (HMM E-Value=9.2e-39)                29   6.5  
SB_9982| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.6  

>SB_6324| Best HMM Match : MCM (HMM E-Value=0)
          Length = 1592

 Score =  150 bits (363), Expect = 2e-36
 Identities = 83/179 (46%), Positives = 112/179 (62%), Gaps = 3/179 (1%)
 Frame = +2

Query: 101  RQQLFV*HISKIMAMRDYTADKESFKNFFVDFCQTDDEGKKYFKYAEQLTKVAHREQIAF 280
            R Q+ V  + K +  +   +DK   K F  +F    DEGK+ FKY EQL K+AHREQ   
Sbjct: 537  RLQIGVLFVDKTIKHKLDHSDKA--KRFLAEFYVQGDEGKE-FKYGEQLIKIAHREQQEL 593

Query: 281  EVDLDDLHEMNEDLTEAVKQNTRRYTNMVSDVVYEMLPDYKFKEVVAKDSLDVYIEHRIM 460
             ++LDD+ E+++DL E VK+NTRRY  +  D +YEMLP+YK +EV  KD+LD+YIEHR++
Sbjct: 594  LIELDDIAEIDQDLAENVKENTRRYKRLFEDAIYEMLPEYKEREVQTKDALDIYIEHRLL 653

Query: 461  LEARNHR-IPGEMRDPRNRYPPELIRRFEVYFKDLST--SKSVPIREVKAEHIGKLVTV 628
            LE RN +  PG   DPR +YPPEL+RR       L T  SK V  +E+K +     V V
Sbjct: 654  LEQRNRQNEPGGAIDPRTKYPPELLRRLAGGRLYLQTRGSKFVKFQELKIQEHSDQVPV 712



 Score = 30.7 bits (66), Expect = 1.6
 Identities = 12/19 (63%), Positives = 17/19 (89%)
 Frame = +2

Query: 791 GQLHLQTRGSRFQKFRSLR 847
           G+L+LQTRGS+F KF+ L+
Sbjct: 684 GRLYLQTRGSKFVKFQELK 702


>SB_56664| Best HMM Match : bZIP_1 (HMM E-Value=0.00033)
          Length = 652

 Score = 48.0 bits (109), Expect = 1e-05
 Identities = 27/93 (29%), Positives = 44/93 (47%)
 Frame = +2

Query: 584 IREVKAEHIGKLVTVRGIVTRCTDVKPLLVVATYSCSACGAETYQPVRALQFTPPPACTA 763
           IRE+ ++ IG L+ + G V R   V P LV AT++C  C        +  ++T P  C  
Sbjct: 509 IRELTSQKIGSLLRISGQVVRTHPVHPELVTATFTCLDCQTVIKDVEQQFKYTQPTVCRN 568

Query: 764 DDCRLNKTAGQLHLQTRGSRFQKFRSLRYRSTR 862
             C   +   +  L    SR+  F+ +R + T+
Sbjct: 569 PIC---QNRARFALDINKSRYVDFQKVRIQETQ 598


>SB_43377| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 625

 Score = 42.7 bits (96), Expect = 4e-04
 Identities = 27/125 (21%), Positives = 58/125 (46%)
 Frame = +2

Query: 161 DKESFKNFFVDFCQTDDEGKKYFKYAEQLTKVAHREQIAFEVDLDDLHEMNEDLTEAVKQ 340
           ++ S K  F +F +   EG   F Y +QL +  +  Q   EVDL+DL   +E+L + +++
Sbjct: 27  NRVSAKKRFKEFLREFHEGTFAFPYRDQLKQHYNLGQYYLEVDLEDLSSFDENLADKLRK 86

Query: 341 NTRRYTNMVSDVVYEMLPDYKFKEVVAKDSLDVYIEHRIMLEARNHRIPGEMRDPRNRYP 520
           N   Y  +      E+  +      + ++ +       + +  R+   P ++R+ R+ + 
Sbjct: 87  NPSEYLPLFETAAKEVADEVTRPRPIGEEEV-----QDVQITLRSGANPFQIRELRSEHM 141

Query: 521 PELIR 535
             L++
Sbjct: 142 AALVK 146



 Score = 32.3 bits (70), Expect = 0.53
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = +2

Query: 584 IREVKAEHIGKLVTVRGIVTRCTDVKPLLVVATYSCSAC 700
           IRE+++EH+  LV + GI+   + ++      T  C +C
Sbjct: 133 IRELRSEHMAALVKIPGIIISASSIRSKATNITIQCRSC 171


>SB_53807| Best HMM Match : MCM (HMM E-Value=0)
          Length = 789

 Score = 34.7 bits (76), Expect = 0.099
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +2

Query: 584 IREVKAEHIGKLVTVRGIVTRCTDVKPLLVVATYSCSAC 700
           +R ++  H+ +L+   G+VT  T + P L V  Y C  C
Sbjct: 216 LRSLRQLHVNQLIRTGGVVTSSTGIMPQLSVIKYDCPKC 254


>SB_18027| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 218

 Score = 33.1 bits (72), Expect = 0.30
 Identities = 19/68 (27%), Positives = 34/68 (50%)
 Frame = +2

Query: 125 ISKIMAMRDYTADKESFKNFFVDFCQTDDEGKKYFKYAEQLTKVAHREQIAFEVDLDDLH 304
           + K +   D T     F+   ++   T+ E  K   YA +  K AH++     +D+DD+H
Sbjct: 71  LEKQLNQIDGTLSTIEFQREALEGANTNTEVLKNMSYAAKALKAAHQQ-----LDVDDVH 125

Query: 305 EMNEDLTE 328
           +M +D+ E
Sbjct: 126 DMMDDIQE 133


>SB_49427| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1958

 Score = 32.3 bits (70), Expect = 0.53
 Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
 Frame = +2

Query: 494 MRDPRNRYPPELIRRFEVYFKDLSTSKSVPIREVKAEHIGKLVTVR---GIVTRCTDVKP 664
           +R P  R PP  +  F   F+DL  S++  IRE  + +   +V VR   G +  C D + 
Sbjct: 399 VRQPHRRVPPGQLEEFRSAFEDLLESRT--IRESNSPYASPVVLVRKKDGALRVCVDFRQ 456

Query: 665 L 667
           L
Sbjct: 457 L 457


>SB_38304| Best HMM Match : TPR_MLP1_2 (HMM E-Value=0.39)
          Length = 704

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 19/70 (27%), Positives = 32/70 (45%)
 Frame = +2

Query: 287 DLDDLHEMNEDLTEAVKQNTRRYTNMVSDVVYEMLPDYKFKEVVAKDSLDVYIEHRIMLE 466
           DL D H +NE+L++ + Q TRR       V  E+       E + K   ++ + H    +
Sbjct: 32  DLRDAHALNENLSQQL-QETRRSAEEAGHVNKELRQAKLMNEQLGKQLAEL-LNHLSKFK 89

Query: 467 ARNHRIPGEM 496
             N R+  E+
Sbjct: 90  VENERLRSEL 99


>SB_36542| Best HMM Match : Pox_A_type_inc (HMM E-Value=7.3e-11)
          Length = 1500

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 19/70 (27%), Positives = 32/70 (45%)
 Frame = +2

Query: 287  DLDDLHEMNEDLTEAVKQNTRRYTNMVSDVVYEMLPDYKFKEVVAKDSLDVYIEHRIMLE 466
            DL D H +NE+L++ + Q TRR       V  E+       E + K   ++ + H    +
Sbjct: 1252 DLRDAHALNENLSQQL-QETRRSAEEAGHVNKELRQAKLMNEQLGKQLAEL-LNHLSKFK 1309

Query: 467  ARNHRIPGEM 496
              N R+  E+
Sbjct: 1310 VENERLRSEL 1319


>SB_11005| Best HMM Match : SspH (HMM E-Value=0.85)
          Length = 105

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 13/41 (31%), Positives = 26/41 (63%)
 Frame = +2

Query: 230 KYAEQLTKVAHREQIAFEVDLDDLHEMNEDLTEAVKQNTRR 352
           K  E++   + R QI     +D++HE+ E+L EA+++N ++
Sbjct: 19  KQKEEICSSSERAQIT----VDEIHEVAENLVEAIRENKQK 55


>SB_57| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 1498

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = +1

Query: 7    SLPTHYRE-SLRFDFVCDACGRCW*YICD*HLKT 105
            SL  H+RE +   DF CD C +C  +I   HLKT
Sbjct: 956  SLIEHHREVTAEGDFKCDVCEKC--FITKAHLKT 987



 Score = 28.3 bits (60), Expect = 8.6
 Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = +1

Query: 7    SLPTHYRE-SLRFDFVCDACGRCW*YICD*HLKT 105
            SL  H RE +   DF CD C +C  +I   HLKT
Sbjct: 1073 SLIKHQREVTAEGDFKCDVCEKC--FITKAHLKT 1104


>SB_53502| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 323

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
 Frame = +2

Query: 209 DEGKKYFKYA---EQLTKVAHREQIAFEVDLDDLHEMNEDLTEAVKQN 343
           D+ ++Y KY    E+L     REQ +F+  ++DL    ++  EAV+++
Sbjct: 256 DQEQRYLKYMSNLEELQNEEKREQESFKSQIEDLKTRCQEKQEAVEKS 303


>SB_12515| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 769

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 12/48 (25%), Positives = 25/48 (52%)
 Frame = +2

Query: 521 PELIRRFEVYFKDLSTSKSVPIREVKAEHIGKLVTVRGIVTRCTDVKP 664
           P+     ++  +  +  K+  +R +  E I  L+T+ G+VTR + + P
Sbjct: 182 PDTTLEHQIQVRTYNVDKTKNMRALNPEDIDTLITICGMVTRTSSIIP 229


>SB_11299| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3762

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
 Frame = +2

Query: 521  PELIRRFEVYFKDLSTSKSVPIREVKAEHIGKLVTVRGIVTR---CTDVKPLLVVATYSC 691
            PE   +F+  F +L  ++  PI E   ++ GK+  ++ + +    C        +AT +C
Sbjct: 1425 PETATKFKEAFDELKNAE--PISEGVPDNKGKVEEIKTMPSESWECDGCYLSNTLATDTC 1482

Query: 692  SACGAE 709
             ACGAE
Sbjct: 1483 KACGAE 1488


>SB_11157| Best HMM Match : NUC173 (HMM E-Value=9.2e-39)
          Length = 1060

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 18/73 (24%), Positives = 34/73 (46%)
 Frame = -2

Query: 807 CRCSCPAVLLRRQSSAVQAGGGVNCSARTGWYVSAPHALHEYVATTSSGFTSVHRVTIPR 628
           CR    + L + Q   + +    + +++   ++S P A   Y  TT    TS H +T P+
Sbjct: 594 CRAFLSSHLDQLQDKLLNSLASSSSASKAVSHLSTPQATSAYHLTTPQT-TSTHHITTPQ 652

Query: 627 TVTSFPICSALTS 589
           T ++  I +  T+
Sbjct: 653 TTSTHHITTPETT 665


>SB_9982| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 252

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = +2

Query: 479 RIPGE-MRDPRNRYPPELIRRFEVYFKDL 562
           R+ G  + DP N+  P+  R+F  YFK L
Sbjct: 107 RVEGRILEDPSNKSEPQRKRKFSTYFKSL 135


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,112,926
Number of Sequences: 59808
Number of extensions: 487536
Number of successful extensions: 1527
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1319
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1524
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2490695009
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)