Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP01_F_E21
(877 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g02060.1 68417.m00276 prolifera protein (PRL) / DNA replicati... 161 7e-40
At5g44635.1 68418.m05469 minichromosome maintenance family prote... 60 3e-09
At3g09660.1 68416.m01145 minichromosome maintenance family prote... 56 2e-08
At5g46280.1 68418.m05697 DNA replication licensing factor, putat... 44 1e-04
At1g44900.1 68414.m05144 DNA replication licensing factor, putat... 39 0.005
At3g50280.1 68416.m05498 transferase family protein similar to a... 35 0.062
At3g50300.1 68416.m05501 transferase family protein similar to a... 32 0.44
At1g08600.1 68414.m00953 SNF2 domain-containing protein / helica... 30 1.8
At4g37370.1 68417.m05292 cytochrome P450, putative similar to Cy... 29 4.1
At1g47390.1 68414.m05246 F-box family protein contains F-box dom... 28 7.1
At1g12070.1 68414.m01393 Rho GDP-dissociation inhibitor family p... 28 7.1
At1g01390.1 68414.m00054 UDP-glucoronosyl/UDP-glucosyl transfera... 28 7.1
At2g35030.1 68415.m04297 pentatricopeptide (PPR) repeat-containi... 28 9.4
At1g74310.1 68414.m08605 heat shock protein 101 (HSP101) identic... 28 9.4
At1g16380.1 68414.m01959 cation/proton exchanger, putative (CHX1... 28 9.4
>At4g02060.1 68417.m00276 prolifera protein (PRL) / DNA replication
licensing factor Mcm7 (MCM7) identical to DNA
replication licensing factor Mcm7 SP|P43299 PROLIFERA
protein {Arabidopsis thaliana}; contains Pfam profile
PF00493: MCM2/3/5 family
Length = 716
Score = 161 bits (390), Expect = 7e-40
Identities = 97/240 (40%), Positives = 132/240 (55%), Gaps = 3/240 (1%)
Frame = +2
Query: 137 MAMRDYTADKESFKNFFVDFCQTDDEGKKYFKYAEQLTKVAHREQIAFEVDLDDLHEMNE 316
M D+ DK K F +F D G+ KY E L +V++R+ A +VDLDDL +
Sbjct: 1 MKDHDFDGDKGLAKGFLENFA--DANGRS--KYMEILQEVSNRKIRAIQVDLDDLFNYKD 56
Query: 317 DLTE---AVKQNTRRYTNMVSDVVYEMLPDYKFKEVVAKDSLDVYIEHRIMLEARNHRIP 487
+ E + +NTRRY ++ S V E+LP+ E D D+ + R A +
Sbjct: 57 ESEEFLGRLTENTRRYVSIFSAAVDELLPEPT--EAFPDDDHDILMTQR----ADDGTDN 110
Query: 488 GEMRDPRNRYPPELIRRFEVYFKDLSTSKSVPIREVKAEHIGKLVTVRGIVTRCTDVKPL 667
++ DP + P E+ R +EVYFK S + IREVKA HIG+LV + GIVTRC+DVKPL
Sbjct: 111 PDVSDPHQQIPSEIKRYYEVYFKAPSKGRPSTIREVKASHIGQLVRISGIVTRCSDVKPL 170
Query: 668 LVVATYSCSACGAETYQPVRALQFTPPPACTADDCRLNKTAGQLHLQTRGSRFQKFRSLR 847
+ VA Y+C CG E YQ V + F P C + CRLN AG LQ R S+F KF+ +
Sbjct: 171 MAVAVYTCEDCGHEIYQEVTSRVFMPLFKCPSSRCRLNSKAGNPILQLRASKFLKFQEAK 230
>At5g44635.1 68418.m05469 minichromosome maintenance family protein
/ MCM family protein similar to SP|P97311 DNA
replication licensing factor MCM6 {Mus musculus};
contains Pfam profile PF00493: MCM2/3/5 family
Length = 831
Score = 59.7 bits (138), Expect = 3e-09
Identities = 46/159 (28%), Positives = 74/159 (46%), Gaps = 1/159 (0%)
Frame = +2
Query: 404 FKEVVAKDSLDVYIEHRIMLEARNHRIPGEMRDPRNRYPPELIRRFEVYFKDLSTSKSVP 583
F + + K D Y+ L R EM +P + V F +L +K
Sbjct: 63 FNDALQKAIADEYLRFEPYLRNACKRFVIEM-NPSFISDDTPNKDINVSFYNLPFTKR-- 119
Query: 584 IREVKAEHIGKLVTVRGIVTRCTDVKPLLVVATYSCSACGAETYQPVRALQFTPPPACTA 763
+RE+ IGKLV+V G+VTR ++V+P L+ T+ C CG+ + ++T P C +
Sbjct: 120 LRELTTAEIGKLVSVTGVVTRTSEVRPELLYGTFKCLDCGSVIKNVEQQFKYTQPTICVS 179
Query: 764 DDCRLNKTAGQLHLQTRGSRFQKFRSLRYRST-RPSPGG 877
C LN+ L Q S+F ++ +R + T + P G
Sbjct: 180 PTC-LNRARWALLRQE--SKFADWQRVRMQETSKEIPAG 215
>At3g09660.1 68416.m01145 minichromosome maintenance family protein
/ MCM family protein similar to SP|P49717 DNA
replication licensing factor MCM4 (CDC21 homolog) {Mus
musculus}; contains Pfam profile PF00493: MCM2/3/5
family
Length = 777
Score = 56.4 bits (130), Expect = 2e-08
Identities = 28/88 (31%), Positives = 46/88 (52%)
Frame = +2
Query: 575 SVPIREVKAEHIGKLVTVRGIVTRCTDVKPLLVVATYSCSACGAETYQPVRALQFTPPPA 754
S+ ++ ++A +IGKLVTV G V + + VKPL+ + C C + +F+PP
Sbjct: 142 SISLKNLRAAYIGKLVTVHGTVVKVSTVKPLVTQMAFDCGKCKTGITREFTDGKFSPPLK 201
Query: 755 CTADDCRLNKTAGQLHLQTRGSRFQKFR 838
C + C+ +KT + + FQK R
Sbjct: 202 CDSHGCK-SKTFTPIRSSAQTIDFQKIR 228
>At5g46280.1 68418.m05697 DNA replication licensing factor, putative
similar to SP|Q43704 DNA replication licensing factor
MCM3 homolog (Replication origin activator) (ROA
protein) {Zea mays}; contains Pfam profile PF00493:
MCM2/3/5 family
Length = 776
Score = 44.4 bits (100), Expect = 1e-04
Identities = 28/77 (36%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Frame = +2
Query: 500 DPRNRYPPELIR-RFEVYFKDLSTSKSVPIREVKAEHIGKLVTVRGIVTRCTDVKPLLVV 676
DP+ EL+ FE YF S+ V RE+ ++ IG +V V GIVT+C+ V+P +V
Sbjct: 79 DPKYLKEGELVLVGFEGYF----VSRVVTPRELLSDFIGSMVCVEGIVTKCSLVRPKVVK 134
Query: 677 ATYSCSACGAETYQPVR 727
+ + C + G T + R
Sbjct: 135 SVHFCPSTGEFTNRDYR 151
>At1g44900.1 68414.m05144 DNA replication licensing factor, putative
similar to DNA replication licensing factor MCM2 from
{Xenopus laevis} SP|P55861, SP|P49736 {Homo sapiens};
contains Pfam profile PF00493: MCM2/3/5 family
Length = 928
Score = 38.7 bits (86), Expect = 0.005
Identities = 16/55 (29%), Positives = 30/55 (54%)
Frame = +2
Query: 542 EVYFKDLSTSKSVPIREVKAEHIGKLVTVRGIVTRCTDVKPLLVVATYSCSACGA 706
++Y + + + IR ++ H+ ++ + G+VTR + V P L Y C+ CGA
Sbjct: 298 KIYVRVTNLPVNDQIRNIRQIHLNTMIRIGGVVTRRSGVFPQLQQVKYDCNKCGA 352
>At3g50280.1 68416.m05498 transferase family protein similar to
anthranilate N-hydroxycinnamoyl/benzoyltransferase,
Dianthus caryophyllus, PIR:T10717 [gi:2239091]; contains
Pfam transferase family domain PF002458
Length = 443
Score = 35.1 bits (77), Expect = 0.062
Identities = 20/47 (42%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = +2
Query: 536 RFEVYFKDLSTSKSVPIREVKAEHI-GKLVTVRGIVTRCTDVKPLLV 673
RFEVY D K + +R + I GKLV RGI C DV L+
Sbjct: 379 RFEVYDNDFGWGKPIAVRAGPSNSISGKLVFFRGIEEGCIDVHAFLL 425
>At3g50300.1 68416.m05501 transferase family protein similar to
anthranilate N-hydroxycinnamoyl/benzoyltransferase,
Dianthus caryophyllus [gi:2239091]; contains Pfam
transferase family domain PF002458
Length = 448
Score = 32.3 bits (70), Expect = 0.44
Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = +2
Query: 539 FEVYFKDLSTSKSVPIREVKAEHIG-KLVTVRGIVTRCTDVKPLLVVATYS 688
F+VY D K + +R A IG KLV RGI DV +L ++ +S
Sbjct: 380 FQVYDNDFGLGKPMAVRAGPANGIGGKLVVFRGIEEGSIDVHAILTLSLWS 430
>At1g08600.1 68414.m00953 SNF2 domain-containing protein / helicase
domain-containing protein similar to SP|P46100
Transcriptional regulator ATRX {Homo sapiens}; contains
PFam profiles PF00271: Helicase conserved C-terminal
domain, PF00176: SNF2 family N-terminal domain;
non-consensus GC donor splice site at exon boundary 28614
Length = 1457
Score = 30.3 bits (65), Expect = 1.8
Identities = 13/47 (27%), Positives = 26/47 (55%)
Frame = +2
Query: 239 EQLTKVAHREQIAFEVDLDDLHEMNEDLTEAVKQNTRRYTNMVSDVV 379
+Q+ + +E++ + DD E +E +TE KQN ++N+V +
Sbjct: 1258 QQVHRTISKEEMLHLFEFDDDDEKSEAVTEISKQNEAGHSNLVEQAI 1304
>At4g37370.1 68417.m05292 cytochrome P450, putative similar to
Cytochrome P450 91A1 (SP:Q9FG65 )[Arabidopsis thaliana];
cytochrome P450, Glycyrrhiza echinata, AB001379
Length = 497
Score = 29.1 bits (62), Expect = 4.1
Identities = 19/51 (37%), Positives = 26/51 (50%)
Frame = +3
Query: 105 SNYSYNIFLK*WQCVITLQIKNLSRTFSWIFVKLMMKEKSILNMLNNLLKL 257
SN+ N FL + I + LSR FS FVK+ MK NN+L++
Sbjct: 138 SNHRLNSFLSIRKDEIRRLVFRLSRNFSQEFVKVDMKSMLSDLTFNNILRM 188
>At1g47390.1 68414.m05246 F-box family protein contains F-box domain
Pfam:PF00646
Length = 370
Score = 28.3 bits (60), Expect = 7.1
Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Frame = -2
Query: 630 RTVTSFPICSALTSLIGTLFD-VDKSLKYTSNLLMSSGGYLFLGSLIS-PGILWFLASNI 457
+T+ S+P T + + D S KYT+ ++ S G G+ +S GIL+++AS++
Sbjct: 147 KTLVSYPNELDPTRSVWKIHDFASNSWKYTNLVMSCSSGVTLFGASVSLNGILYWVASHL 206
>At1g12070.1 68414.m01393 Rho GDP-dissociation inhibitor family
protein similar to SP|P52565 Rho GDP-dissociation
inhibitor 1 (Rho GDI 1) (Rho-GDI alpha) {Homo sapiens};
contains Pfam profile PF02115: RHO protein GDP
dissociation inhibitor
Length = 223
Score = 28.3 bits (60), Expect = 7.1
Identities = 17/55 (30%), Positives = 26/55 (47%)
Frame = +2
Query: 170 SFKNFFVDFCQTDDEGKKYFKYAEQLTKVAHREQIAFEVDLDDLHEMNEDLTEAV 334
S KN C TDD+ ++ K E +A +EQ+ + D + L E L +V
Sbjct: 23 SRKNSHSSMCPTDDDEEEEDKKLELGPMIALKEQLEKDKDDESLRRWKEQLLGSV 77
>At1g01390.1 68414.m00054 UDP-glucoronosyl/UDP-glucosyl transferase
family protein contains Pfam profile: PF00201
UDP-glucoronosyl and UDP-glucosyl transferase
Length = 480
Score = 28.3 bits (60), Expect = 7.1
Identities = 16/68 (23%), Positives = 31/68 (45%)
Frame = +2
Query: 152 YTADKESFKNFFVDFCQTDDEGKKYFKYAEQLTKVAHREQIAFEVDLDDLHEMNEDLTEA 331
+ A + +FF+ + D F+Y + K+ I + LD + + N+D +
Sbjct: 137 FYASNANVLSFFLHLPKLDKTVSCEFRYLTEPLKIPGCVPITGKDFLDTVQDRNDDAYKL 196
Query: 332 VKQNTRRY 355
+ NT+RY
Sbjct: 197 LLHNTKRY 204
>At2g35030.1 68415.m04297 pentatricopeptide (PPR) repeat-containing
protein contains INTERPRO:IPR002885 PPR repeats
Length = 627
Score = 27.9 bits (59), Expect = 9.4
Identities = 17/44 (38%), Positives = 24/44 (54%)
Frame = +2
Query: 527 LIRRFEVYFKDLSTSKSVPIREVKAEHIGKLVTVRGIVTRCTDV 658
L+ + +FKDL +S+P+RE EH LV + G R DV
Sbjct: 449 LVEKGMEFFKDLVRDESLPLRE---EHYTCLVDLCGRAGRLKDV 489
>At1g74310.1 68414.m08605 heat shock protein 101 (HSP101) identical
to heat shock protein 101 GI:6715468 GB:AAF26423 from
[Arabidopsis thaliana]
Length = 911
Score = 27.9 bits (59), Expect = 9.4
Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Frame = +2
Query: 494 MRDPRNRYPPELIRRFE--VYFKDLSTSKSVPIREVKAEHIGKLVTVRGIVTRCTD 655
MR+ R + PEL+ R + V F LS + + ++ + + + RG+ TD
Sbjct: 744 MREVRKHFRPELLNRLDEIVVFDPLSHDQLRKVARLQMKDVAVRLAERGVALAVTD 799
>At1g16380.1 68414.m01959 cation/proton exchanger, putative (CHX1)
monovalent cation:proton antiporter family 2 (CPA2)
member, PMID:11500563
Length = 785
Score = 27.9 bits (59), Expect = 9.4
Identities = 16/50 (32%), Positives = 25/50 (50%)
Frame = -2
Query: 618 SFPICSALTSLIGTLFDVDKSLKYTSNLLMSSGGYLFLGSLISPGILWFL 469
SF + +A LIG D+D + N ++ + G L + +I LWFL
Sbjct: 84 SFLLRTAFVFLIGLEIDLDFMKRNLKNSIVITLGSLVISGIIWLPFLWFL 133
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,737,742
Number of Sequences: 28952
Number of extensions: 338171
Number of successful extensions: 1210
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1033
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1207
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2058178400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -