Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP01_F_E18
(950 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q5UAT5 Cluster: 60S ribosomal protein L6; n=15; Bilater... 290 4e-77
UniRef50_Q9V9W3 Cluster: 60S ribosomal protein L6; n=6; Metazoa|... 153 8e-36
UniRef50_Q02878 Cluster: 60S ribosomal protein L6; n=71; Euteleo... 136 8e-31
UniRef50_Q6B8B0 Cluster: 60S ribosomal protein L6; n=1; Ixodes p... 131 3e-29
UniRef50_A7S4S4 Cluster: Predicted protein; n=5; Eukaryota|Rep: ... 126 1e-27
UniRef50_A7L698 Cluster: 60S ribosomal protein L6; n=1; Artemia ... 104 4e-21
UniRef50_Q7XY83 Cluster: 60S ribosomal protein L6; n=1; Griffith... 100 5e-20
UniRef50_Q5DE99 Cluster: 60S ribosomal protein L6; n=1; Schistos... 95 3e-18
UniRef50_A3F4R4 Cluster: 60S ribosomal protein L6; n=1; Taenia a... 90 9e-17
UniRef50_Q4N3I8 Cluster: 60S ribosomal protein L6e, putative; n=... 88 4e-16
UniRef50_Q1DRV0 Cluster: 60S ribosomal protein L6; n=15; Pezizom... 86 1e-15
UniRef50_Q9C9C6 Cluster: 60S ribosomal protein L6-2; n=11; Eukar... 86 1e-15
UniRef50_Q54D63 Cluster: 60S ribosomal protein L6; n=2; Eukaryot... 82 2e-14
UniRef50_Q01IK4 Cluster: 60S ribosomal protein L6; n=17; Eukaryo... 81 5e-14
UniRef50_Q5CM54 Cluster: 60S ribosomal protein L6; n=2; Cryptosp... 81 5e-14
UniRef50_Q7SH22 Cluster: 60S ribosomal protein L6; n=2; Sordaria... 77 7e-13
UniRef50_Q4X638 Cluster: 60S ribosomal subunit protein L6e, puta... 74 5e-12
UniRef50_P47991 Cluster: 60S ribosomal protein L6; n=2; Caenorha... 73 1e-11
UniRef50_Q02326 Cluster: 60S ribosomal protein L6-A; n=16; Dikar... 73 1e-11
UniRef50_UPI0000DC20AA Cluster: UPI0000DC20AA related cluster; n... 69 1e-10
UniRef50_A0CYT3 Cluster: 60S ribosomal protein L6; n=5; Oligohym... 68 4e-10
UniRef50_UPI0000DA1E66 Cluster: PREDICTED: similar to ribosomal ... 63 9e-09
UniRef50_Q4Q4D3 Cluster: 60S ribosomal protein L6, putative; n=1... 62 3e-08
UniRef50_A2EBD1 Cluster: 60S ribosomal protein L6, putative; n=7... 55 3e-06
UniRef50_A5C5P0 Cluster: 60S ribosomal protein L6; n=1; Vitis vi... 54 5e-06
UniRef50_Q8SR91 Cluster: 60S RIBOSOMAL PROTEIN L6; n=1; Encephal... 48 3e-04
UniRef50_Q8U2L5 Cluster: 50S ribosomal protein L14e; n=5; Archae... 41 0.053
UniRef50_Q7QVA1 Cluster: 60S ribosomal protein L27; n=1; Giardia... 40 0.093
UniRef50_P54054 Cluster: 50S ribosomal protein L14e; n=8; Euryar... 40 0.12
UniRef50_A7QIH5 Cluster: Chromosome chr12 scaffold_103, whole ge... 39 0.16
UniRef50_Q8ZYB4 Cluster: 50S ribosomal protein L14e; n=14; Archa... 38 0.38
UniRef50_A0N0S1 Cluster: 60S ribosomal protein L6; n=1; Strongyl... 37 0.87
UniRef50_Q4ZTN3 Cluster: Sensor protein; n=5; Pseudomonas|Rep: S... 34 6.1
UniRef50_Q98RL7 Cluster: 60S ribosomal protein L6B; n=1; Guillar... 34 6.1
UniRef50_A7ET80 Cluster: Putative uncharacterized protein; n=1; ... 34 6.1
UniRef50_Q5KML3 Cluster: VpsB, putative; n=2; Basidiomycota|Rep:... 33 8.1
>UniRef50_Q5UAT5 Cluster: 60S ribosomal protein L6; n=15;
Bilateria|Rep: 60S ribosomal protein L6 - Bombyx mori
(Silk moth)
Length = 273
Score = 290 bits (711), Expect = 4e-77
Identities = 141/153 (92%), Positives = 141/153 (92%)
Frame = +3
Query: 198 RNYDLGNGVMRFSKSKMFHKKAKYKFIGXXXXXXXXXXXLTVVVKQIGGEKNGGTRTVPL 377
RNYDLGNGVMRFSKSKMFHKKAKYKFIG LTVVVKQIGGEKNGGTRTVPL
Sbjct: 30 RNYDLGNGVMRFSKSKMFHKKAKYKFIGKKNPKPEKPKKLTVVVKQIGGEKNGGTRTVPL 89
Query: 378 KRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSG 557
KRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSG
Sbjct: 90 KRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSG 149
Query: 558 LLLVTGPFAFNSCPLRRIPQRYVICTSTRISLG 656
LLLVTGPFAFNSCPLRRIPQRYVI TSTRISLG
Sbjct: 150 LLLVTGPFAFNSCPLRRIPQRYVIGTSTRISLG 182
Score = 60.9 bits (141), Expect = 5e-08
Identities = 28/46 (60%), Positives = 28/46 (60%)
Frame = +1
Query: 655 GNFKLPKHFNDDYFXXXXXXXXXXXXXXEGDDIFATKKEKYXTDTQ 792
GNFKLPKHFNDDYF EGDDIFATKKEKY Q
Sbjct: 182 GNFKLPKHFNDDYFKKNKKCVKRTVKRKEGDDIFATKKEKYVPSEQ 227
>UniRef50_Q9V9W3 Cluster: 60S ribosomal protein L6; n=6;
Metazoa|Rep: 60S ribosomal protein L6 - Drosophila
melanogaster (Fruit fly)
Length = 262
Score = 153 bits (370), Expect = 8e-36
Identities = 78/152 (51%), Positives = 100/152 (65%)
Frame = +3
Query: 201 NYDLGNGVMRFSKSKMFHKKAKYKFIGXXXXXXXXXXXLTVVVKQIGGEKNGGTRTVPLK 380
N L G++R+SK++M+ ++A Y+ VK+IGG KNGG RTV LK
Sbjct: 23 NSYLKGGILRYSKAQMYKRRALYRLKDKKSPVVEKAKVPIKKVKKIGGPKNGGERTVFLK 82
Query: 381 RRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSGL 560
+ K+ YPT+ ++ FS+H R R NL GTV ILLAGRH GKRVVL+ +L SGL
Sbjct: 83 KSKASYPTKTFVKKRPSKANFSEHKRNTRRNLTPGTVLILLAGRHQGKRVVLLKVLASGL 142
Query: 561 LLVTGPFAFNSCPLRRIPQRYVICTSTRISLG 656
LLVTGPFA NSCPLRR+ QRYVI TS+++ LG
Sbjct: 143 LLVTGPFALNSCPLRRVSQRYVIGTSSKVDLG 174
>UniRef50_Q02878 Cluster: 60S ribosomal protein L6; n=71;
Euteleostomi|Rep: 60S ribosomal protein L6 - Homo
sapiens (Human)
Length = 288
Score = 136 bits (329), Expect = 8e-31
Identities = 72/158 (45%), Positives = 97/158 (61%), Gaps = 6/158 (3%)
Frame = +3
Query: 198 RNYDLGNGVMRFSKSKMFHKKA----KYKFIGXXXXXXXXXXXLTVVVKQIGGEKNGGTR 365
RN L G+ R+S+S M+ +KA KY L V K +GG+KNGGTR
Sbjct: 46 RNPVLVRGIGRYSRSAMYSRKAMYKRKYSAAKSKVEKKKKEKVLATVTKPVGGDKNGGTR 105
Query: 366 TVPLKRRKSFYPTQEKIRA--SSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLV 539
V L++ +YPT++ R S G +PFS+HVR++R ++ GT+ I+L GRH GKRVV +
Sbjct: 106 VVKLRKMPRYYPTEDVPRKLLSHGKKPFSQHVRKLRASITPGTILIILTGRHRGKRVVFL 165
Query: 540 GILPSGLLLVTGPFAFNSCPLRRIPQRYVICTSTRISL 653
L SGLLLVTGP N PLRR Q++VI TST+I +
Sbjct: 166 KQLASGLLLVTGPLVLNRVPLRRTHQKFVIATSTKIDI 203
>UniRef50_Q6B8B0 Cluster: 60S ribosomal protein L6; n=1; Ixodes
pacificus|Rep: 60S ribosomal protein L6 - Ixodes
pacificus (western blacklegged tick)
Length = 268
Score = 131 bits (316), Expect = 3e-29
Identities = 70/154 (45%), Positives = 94/154 (61%), Gaps = 2/154 (1%)
Frame = +3
Query: 198 RNYDLGNGVMRFSKSKMFHKKAKYKFIGXXXXXXXXXXXLTVVVKQIGGEKNGGTRTVPL 377
+N+ L GV FS+SKMFHK+ +K V VK++ GEKNGG R +PL
Sbjct: 26 KNHKLPGGVWLFSRSKMFHKRGLFKVKHAAPTKEKRKRKKRVTVKRVKGEKNGGKRVLPL 85
Query: 378 KRRKSFYPTQE--KIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILP 551
K+ + YPT++ + + +S +P S+ +R + GTV ILLAG H GKRVV + L
Sbjct: 86 KKERRSYPTEDSPQHKRTSHMKPSSRTRVALRKRITPGTVLILLAGPHRGKRVVFLKQLK 145
Query: 552 SGLLLVTGPFAFNSCPLRRIPQRYVICTSTRISL 653
+GLL VTGP+ N CPLRRI Q YVI TST++ L
Sbjct: 146 TGLLPVTGPYGVNGCPLRRINQIYVIATSTKLDL 179
>UniRef50_A7S4S4 Cluster: Predicted protein; n=5; Eukaryota|Rep:
Predicted protein - Nematostella vectensis
Length = 244
Score = 126 bits (303), Expect = 1e-27
Identities = 70/152 (46%), Positives = 91/152 (59%)
Frame = +3
Query: 198 RNYDLGNGVMRFSKSKMFHKKAKYKFIGXXXXXXXXXXXLTVVVKQIGGEKNGGTRTVPL 377
RN +L G+ R+S+S ++ K+A YK T K IGG+KNGG R VP+
Sbjct: 11 RNPELAPGISRYSRSAIYKKRALYKRKKTGVKKVVQDEPRTKT-KDIGGDKNGGKRVVPV 69
Query: 378 KRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSG 557
+R +YPT++ +R R + ++R ++ GTV ILLAG H GKRVV + L SG
Sbjct: 70 QRESRYYPTED-VRRRLANRK-KPGMAKLRSSITPGTVLILLAGAHRGKRVVFLKQLNSG 127
Query: 558 LLLVTGPFAFNSCPLRRIPQRYVICTSTRISL 653
LLLVTGPF N PLRRIPQ YVI TST I +
Sbjct: 128 LLLVTGPFKINGVPLRRIPQSYVIATSTHIDV 159
>UniRef50_A7L698 Cluster: 60S ribosomal protein L6; n=1; Artemia
franciscana|Rep: 60S ribosomal protein L6 - Artemia
sanfranciscana (Brine shrimp) (Artemia franciscana)
Length = 241
Score = 104 bits (249), Expect = 4e-21
Identities = 54/111 (48%), Positives = 73/111 (65%)
Frame = +3
Query: 321 VVVKQIGGEKNGGTRTVPLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCIL 500
V+ K+IGG+KNGGTR V ++ FYP + + +K+ +IR +L+ GT+ IL
Sbjct: 44 VIEKKIGGDKNGGTRLVSTRKPPQFYPINSRQKRFHRRLVNNKNPPKIRKSLQPGTILIL 103
Query: 501 LAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRIPQRYVICTSTRISL 653
LAG + GKRVVL+ L SGLLLV+GP N PLRR+ Q+ VI TSTRI +
Sbjct: 104 LAGVNRGKRVVLLKALKSGLLLVSGPLKVNRVPLRRVHQKLVIATSTRIDI 154
>UniRef50_Q7XY83 Cluster: 60S ribosomal protein L6; n=1; Griffithsia
japonica|Rep: 60S ribosomal protein L6 - Griffithsia
japonica (Red alga)
Length = 216
Score = 100 bits (240), Expect = 5e-20
Identities = 53/113 (46%), Positives = 70/113 (61%)
Frame = +3
Query: 315 LTVVVKQIGGEKNGGTRTVPLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVC 494
+ ++ K IGG KNGG R VP K+ +YP +K + K + +RP++K GT+
Sbjct: 20 IKMIKKPIGGAKNGGYRLVPEKKGPKWYPADDKKTPVPSRKNVHKPTK-LRPSIKSGTIV 78
Query: 495 ILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRIPQRYVICTSTRISL 653
ILLAG G RVV++ L SG LLVTGP+A N PL R+ QRYVI TST I +
Sbjct: 79 ILLAGVFRGSRVVVLKQLDSGQLLVTGPYAVNRIPLTRVDQRYVIATSTSIDV 131
>UniRef50_Q5DE99 Cluster: 60S ribosomal protein L6; n=1; Schistosoma
japonicum|Rep: 60S ribosomal protein L6 - Schistosoma
japonicum (Blood fluke)
Length = 238
Score = 94.7 bits (225), Expect = 3e-18
Identities = 52/97 (53%), Positives = 64/97 (65%), Gaps = 3/97 (3%)
Frame = +3
Query: 372 PLKRRKSFYPTQE---KIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVG 542
P R Y TQ+ K+R + FS HVR+IR +++ GTV ILLAG H GKRV+ +
Sbjct: 55 PKTRFPRSYVTQQGKRKLRLRRA-KCFSNHVRKIRSSIQPGTVLILLAGPHKGKRVIFLK 113
Query: 543 ILPSGLLLVTGPFAFNSCPLRRIPQRYVICTSTRISL 653
L SGLLLVTGPF +N PLRR+ Q YVI TSTRI +
Sbjct: 114 ALKSGLLLVTGPFKYNGVPLRRVNQCYVIATSTRIDI 150
>UniRef50_A3F4R4 Cluster: 60S ribosomal protein L6; n=1; Taenia
asiatica|Rep: 60S ribosomal protein L6 - Taenia asiatica
(Asian tapeworm)
Length = 212
Score = 89.8 bits (213), Expect = 9e-17
Identities = 44/71 (61%), Positives = 51/71 (71%)
Frame = +3
Query: 441 FSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRIPQR 620
F+ H RRIR ++ G V ILLAGRH KRVV + L SGLLLVTGPF +N PLRR+ QR
Sbjct: 86 FADHRRRIRKSITPGKVLILLAGRHRAKRVVFLKSLASGLLLVTGPFKYNGVPLRRVNQR 145
Query: 621 YVICTSTRISL 653
YVI T TRI +
Sbjct: 146 YVIATKTRIKI 156
>UniRef50_Q4N3I8 Cluster: 60S ribosomal protein L6e, putative; n=3;
Piroplasmida|Rep: 60S ribosomal protein L6e, putative -
Theileria parva
Length = 212
Score = 87.8 bits (208), Expect = 4e-16
Identities = 48/93 (51%), Positives = 61/93 (65%)
Frame = +3
Query: 369 VPLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGIL 548
V L RRK+ K + GR ++ V ++R +LK G V ILL G + GKRVVL+ +L
Sbjct: 12 VKLNRRKTVVTRLGKTKVV--GRKYAS-VPKVRESLKPGAVLILLTGSYKGKRVVLLKVL 68
Query: 549 PSGLLLVTGPFAFNSCPLRRIPQRYVICTSTRI 647
SGLLLVTGPF+FN PLRR+ RYVI TST +
Sbjct: 69 KSGLLLVTGPFSFNGVPLRRVNSRYVIATSTNV 101
>UniRef50_Q1DRV0 Cluster: 60S ribosomal protein L6; n=15;
Pezizomycotina|Rep: 60S ribosomal protein L6 -
Coccidioides immitis
Length = 206
Score = 86.2 bits (204), Expect = 1e-15
Identities = 48/116 (41%), Positives = 70/116 (60%), Gaps = 4/116 (3%)
Frame = +3
Query: 318 TVVVKQIGGEKN--GGTRTVPLKRRKS--FYPTQEKIRASSGGRPFSKHVRRIRPNLKIG 485
T+ K +G K G R +P +K+ +YP ++ + + + H ++RP+L+ G
Sbjct: 4 TLDSKSVGQTKKFGKGERVIPHPSQKAQKWYPADDEPQPKKARK--TAHPTKLRPSLQPG 61
Query: 486 TVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRIPQRYVICTSTRISL 653
T+ ILLAGR GKRV+L+ L G+LLVTGPF N PLRR+ RYVI TS+ + L
Sbjct: 62 TILILLAGRFRGKRVILLKHLGQGVLLVTGPFKLNGVPLRRVNARYVIATSSTVDL 117
>UniRef50_Q9C9C6 Cluster: 60S ribosomal protein L6-2; n=11;
Eukaryota|Rep: 60S ribosomal protein L6-2 - Arabidopsis
thaliana (Mouse-ear cress)
Length = 233
Score = 86.2 bits (204), Expect = 1e-15
Identities = 55/152 (36%), Positives = 81/152 (53%)
Frame = +3
Query: 198 RNYDLGNGVMRFSKSKMFHKKAKYKFIGXXXXXXXXXXXLTVVVKQIGGEKNGGTRTVPL 377
RN DL GV ++S+S+M+HK+ + + V P+
Sbjct: 12 RNPDLIRGVGKYSRSQMYHKRGLWAIKAKNGGVFPRHDAKSKV-------------DAPV 58
Query: 378 KRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSG 557
++ FYP ++ ++ R +K + +R ++ GTV I+LAGR GKRVV + L SG
Sbjct: 59 EKPPKFYPAED-VKKPLPNRRTAKPAK-LRASITPGTVLIILAGRFKGKRVVFLKQLASG 116
Query: 558 LLLVTGPFAFNSCPLRRIPQRYVICTSTRISL 653
LLLVTGPF N PLRR+ Q YVI TST++ +
Sbjct: 117 LLLVTGPFKINGVPLRRVNQAYVIGTSTKVDI 148
>UniRef50_Q54D63 Cluster: 60S ribosomal protein L6; n=2;
Eukaryota|Rep: 60S ribosomal protein L6 - Dictyostelium
discoideum AX4
Length = 236
Score = 82.2 bits (194), Expect = 2e-14
Identities = 46/99 (46%), Positives = 61/99 (61%)
Frame = +3
Query: 357 GTRTVPLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVL 536
G R + K K +IR+++ + K +R ++ GTV I+LAGR AGKRVV
Sbjct: 54 GKRVIAAKASKFAPSIPAEIRSTAAKKVQQKVA--LRKSITPGTVLIILAGRFAGKRVVA 111
Query: 537 VGILPSGLLLVTGPFAFNSCPLRRIPQRYVICTSTRISL 653
+ L SGL+L+TGPF N PLRRI QRYVI TST+I +
Sbjct: 112 LKQLDSGLILITGPFKVNGVPLRRIDQRYVIATSTKIDV 150
>UniRef50_Q01IK4 Cluster: 60S ribosomal protein L6; n=17;
Eukaryota|Rep: 60S ribosomal protein L6 - Oryza sativa
(Rice)
Length = 222
Score = 80.6 bits (190), Expect = 5e-14
Identities = 44/88 (50%), Positives = 57/88 (64%), Gaps = 1/88 (1%)
Frame = +3
Query: 393 FYPTQE-KIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLV 569
FYP + K R S +P + ++R ++ GTV ILLAGR GKRVV + L SGLLLV
Sbjct: 53 FYPADDVKPRQPSTRKP---NPTKLRSSITPGTVLILLAGRFMGKRVVFLKQLKSGLLLV 109
Query: 570 TGPFAFNSCPLRRIPQRYVICTSTRISL 653
TGPF N P+RR+ Q YVI TST++ +
Sbjct: 110 TGPFKINGVPIRRVNQPYVIATSTKVDI 137
>UniRef50_Q5CM54 Cluster: 60S ribosomal protein L6; n=2;
Cryptosporidium|Rep: 60S ribosomal protein L6 -
Cryptosporidium hominis
Length = 184
Score = 80.6 bits (190), Expect = 5e-14
Identities = 38/79 (48%), Positives = 54/79 (68%)
Frame = +3
Query: 417 RASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSC 596
R S R S ++R +L+ G VCILLAG + GKRVV++ LPSGL++VTGP+A N
Sbjct: 20 RKYSSRRKASVVAPKLRSSLQPGVVCILLAGPYKGKRVVMLKALPSGLVVVTGPYALNGV 79
Query: 597 PLRRIPQRYVICTSTRISL 653
P+RR+ Y+I TST++ +
Sbjct: 80 PVRRVNPAYIIATSTKVDV 98
>UniRef50_Q7SH22 Cluster: 60S ribosomal protein L6; n=2;
Sordariaceae|Rep: 60S ribosomal protein L6 - Neurospora
crassa
Length = 207
Score = 77.0 bits (181), Expect = 7e-13
Identities = 41/75 (54%), Positives = 48/75 (64%), Gaps = 2/75 (2%)
Frame = +3
Query: 435 RPFSKHVRRIRPNLKI--GTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRR 608
RP K +R P + GTV ILLAGR GKRVVL+ L G+LLVTGPF N PLRR
Sbjct: 24 RPVRKTIRPWSPRSTLVPGTVLILLAGRFRGKRVVLLKALDQGVLLVTGPFKINGVPLRR 83
Query: 609 IPQRYVICTSTRISL 653
+ RYVI TS ++ L
Sbjct: 84 VNARYVIATSQKVDL 98
>UniRef50_Q4X638 Cluster: 60S ribosomal subunit protein L6e,
putative; n=5; Plasmodium|Rep: 60S ribosomal subunit
protein L6e, putative - Plasmodium chabaudi
Length = 241
Score = 74.1 bits (174), Expect = 5e-12
Identities = 44/115 (38%), Positives = 64/115 (55%), Gaps = 7/115 (6%)
Frame = +3
Query: 324 VVKQIGGEKNGGTRTVPLKRRKSFYPTQEK--IRASSGGRPFS---KHV--RRIRPNLKI 482
VV G +KN V ++K P + K I GR + K V R++R ++++
Sbjct: 17 VVPATGDKKNALKHYVIKGQKKILTPVRAKKTISKKHYGRKLASKKKFVVQRKMRSSIQV 76
Query: 483 GTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRIPQRYVICTSTRI 647
G V I+L G+H GKR ++ +L SGLL V GP+ N PL+R+ RY+I TST I
Sbjct: 77 GKVAIILTGKHMGKRCIIAKVLKSGLLAVVGPYEVNGVPLKRVDPRYLIVTSTNI 131
>UniRef50_P47991 Cluster: 60S ribosomal protein L6; n=2;
Caenorhabditis|Rep: 60S ribosomal protein L6 -
Caenorhabditis elegans
Length = 217
Score = 72.5 bits (170), Expect = 1e-11
Identities = 38/65 (58%), Positives = 46/65 (70%), Gaps = 1/65 (1%)
Frame = +3
Query: 462 IRPNLKIGTVCILLAGRHAGKRVVLVGILP-SGLLLVTGPFAFNSCPLRRIPQRYVICTS 638
+R L GTV I+LAGRH GKRVV + LP SGLLLVTGP N PLRRI Q +VI TS
Sbjct: 67 LRKTLTPGTVLIVLAGRHKGKRVVFLKQLPQSGLLLVTGPHKINGFPLRRIGQAFVIATS 126
Query: 639 TRISL 653
++++
Sbjct: 127 LKVNV 131
>UniRef50_Q02326 Cluster: 60S ribosomal protein L6-A; n=16;
Dikarya|Rep: 60S ribosomal protein L6-A - Saccharomyces
cerevisiae (Baker's yeast)
Length = 176
Score = 72.5 bits (170), Expect = 1e-11
Identities = 39/92 (42%), Positives = 59/92 (64%)
Frame = +3
Query: 378 KRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSG 557
++ +YP+++ + A R ++ +++R +L GTV ILLAGR GKRVV + L
Sbjct: 4 QKAPKWYPSED-VAALKKTRKAARP-QKLRASLVPGTVLILLAGRFRGKRVVYLKHLEDN 61
Query: 558 LLLVTGPFAFNSCPLRRIPQRYVICTSTRISL 653
LL++GPF N PLRR+ RYVI TST++S+
Sbjct: 62 TLLISGPFKVNGVPLRRVNARYVIATSTKVSV 93
>UniRef50_UPI0000DC20AA Cluster: UPI0000DC20AA related cluster; n=2;
Rattus norvegicus|Rep: UPI0000DC20AA UniRef100 entry -
Rattus norvegicus
Length = 261
Score = 69.3 bits (162), Expect = 1e-10
Identities = 49/151 (32%), Positives = 75/151 (49%)
Frame = +3
Query: 198 RNYDLGNGVMRFSKSKMFHKKAKYKFIGXXXXXXXXXXXLTVVVKQIGGEKNGGTRTVPL 377
RN L G R+S ++ +K Y + + V+K + G+KNGGT V L
Sbjct: 49 RNPILVRGTGRYSIKALYERK--YSAVKSKCEKKKKEKVVATVIKTVSGDKNGGTGVVKL 106
Query: 378 KRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSG 557
++ K + + + + S P KH + + N TV I++ G+H +RVV + L G
Sbjct: 107 QKMKMYLGSCKAMAKS----PAFKHEKAVC-NSTPETVLIIITGQH--RRVVFLKQLSRG 159
Query: 558 LLLVTGPFAFNSCPLRRIPQRYVICTSTRIS 650
LL+TGP A N L R Q+ V+ TST I+
Sbjct: 160 FLLITGPLALNLVLLYRTHQKSVVITSTTIN 190
>UniRef50_A0CYT3 Cluster: 60S ribosomal protein L6; n=5;
Oligohymenophorea|Rep: 60S ribosomal protein L6 -
Paramecium tetraurelia
Length = 208
Score = 67.7 bits (158), Expect = 4e-10
Identities = 39/80 (48%), Positives = 50/80 (62%)
Frame = +3
Query: 414 IRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNS 593
+R RP + +R+I P G V ILL+GR GKRVV + L SGLLLVTGPF N
Sbjct: 44 VRKRKAPRPAT--LRKIVP----GQVLILLSGRFQGKRVVFLKQLKSGLLLVTGPFKING 97
Query: 594 CPLRRIPQRYVICTSTRISL 653
PL+R+ YVI TST++ +
Sbjct: 98 VPLKRVNSAYVIPTSTKVDV 117
>UniRef50_UPI0000DA1E66 Cluster: PREDICTED: similar to ribosomal
protein L6; n=5; Eutheria|Rep: PREDICTED: similar to
ribosomal protein L6 - Rattus norvegicus
Length = 112
Score = 63.3 bits (147), Expect = 9e-09
Identities = 32/56 (57%), Positives = 38/56 (67%)
Frame = +3
Query: 486 TVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRIPQRYVICTSTRISL 653
TV I+L GRH GKRVV + L SGLLLVTGP A N PL R+ Q VI T T++ +
Sbjct: 13 TVLIILTGRHRGKRVVFLKQLGSGLLLVTGPLALNRVPLCRMHQSVVISTFTKVDI 68
>UniRef50_Q4Q4D3 Cluster: 60S ribosomal protein L6, putative; n=11;
Trypanosomatidae|Rep: 60S ribosomal protein L6, putative
- Leishmania major
Length = 195
Score = 61.7 bits (143), Expect = 3e-08
Identities = 29/65 (44%), Positives = 43/65 (66%), Gaps = 1/65 (1%)
Frame = +3
Query: 462 IRPNLKIGTVCILLAGRHAGKRVVLVGILP-SGLLLVTGPFAFNSCPLRRIPQRYVICTS 638
+R + G + I+LAGR G+R V++ LP +G L+V+GP +N P+RRI RYVI TS
Sbjct: 29 LRKSCAPGAIAIILAGRFRGRRAVILKQLPHNGPLVVSGPMKYNGVPIRRIDSRYVIATS 88
Query: 639 TRISL 653
T + +
Sbjct: 89 TTVDI 93
>UniRef50_A2EBD1 Cluster: 60S ribosomal protein L6, putative; n=7;
Trichomonas vaginalis G3|Rep: 60S ribosomal protein L6,
putative - Trichomonas vaginalis G3
Length = 151
Score = 54.8 bits (126), Expect = 3e-06
Identities = 27/63 (42%), Positives = 39/63 (61%)
Frame = +3
Query: 465 RPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRIPQRYVICTSTR 644
RP+LK+GTV I++ G H GKR V+V +G++ + GP P+ I Q Y+I TST
Sbjct: 53 RPSLKVGTVVIVVGGEHQGKRAVVVADQGAGIVKIAGPVV----PVNEISQDYLIATSTS 108
Query: 645 ISL 653
I +
Sbjct: 109 IEV 111
>UniRef50_A5C5P0 Cluster: 60S ribosomal protein L6; n=1; Vitis
vinifera|Rep: 60S ribosomal protein L6 - Vitis vinifera
(Grape)
Length = 249
Score = 54.0 bits (124), Expect = 5e-06
Identities = 25/44 (56%), Positives = 31/44 (70%)
Frame = +3
Query: 522 KRVVLVGILPSGLLLVTGPFAFNSCPLRRIPQRYVICTSTRISL 653
KRVV + L SGLLL+TG F N PLRR+ Q YVI TST++ +
Sbjct: 156 KRVVFLKQLSSGLLLITGSFKINGVPLRRVNQAYVIATSTKVDI 199
>UniRef50_Q8SR91 Cluster: 60S RIBOSOMAL PROTEIN L6; n=1;
Encephalitozoon cuniculi|Rep: 60S RIBOSOMAL PROTEIN L6 -
Encephalitozoon cuniculi
Length = 155
Score = 48.4 bits (110), Expect = 3e-04
Identities = 31/82 (37%), Positives = 45/82 (54%)
Frame = +3
Query: 408 EKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAF 587
EK +A + +P VRR +L G V ++L G A +RVV + L + L GP +
Sbjct: 10 EKYKARTARKP---RVRRT--DLVKGMVVVVLEGVFASRRVVYLKGLEDNIALCAGPKSI 64
Query: 588 NSCPLRRIPQRYVICTSTRISL 653
N PL RI +RY++ TST + L
Sbjct: 65 NGIPLFRIDERYLLATSTVLDL 86
>UniRef50_Q8U2L5 Cluster: 50S ribosomal protein L14e; n=5;
Archaea|Rep: 50S ribosomal protein L14e - Pyrococcus
furiosus
Length = 83
Score = 40.7 bits (91), Expect = 0.053
Identities = 18/53 (33%), Positives = 33/53 (62%)
Frame = +3
Query: 468 PNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRIPQRYV 626
P + +G + +++AGR AG++VV+V I+ +LVTG N RR+ +++
Sbjct: 2 PAIDVGRIAVVIAGRRAGQKVVVVDIIDKNFVLVTGA-GLNKVKRRRMNIKHI 53
>UniRef50_Q7QVA1 Cluster: 60S ribosomal protein L27; n=1; Giardia
lamblia ATCC 50803|Rep: 60S ribosomal protein L27 -
Giardia lamblia ATCC 50803
Length = 135
Score = 39.9 bits (89), Expect = 0.093
Identities = 17/29 (58%), Positives = 22/29 (75%)
Frame = +3
Query: 465 RPNLKIGTVCILLAGRHAGKRVVLVGILP 551
+P +K G VCI+L GRHAGK+ V+V LP
Sbjct: 3 QPIIKPGLVCIVLQGRHAGKKAVIVEALP 31
>UniRef50_P54054 Cluster: 50S ribosomal protein L14e; n=8;
Euryarchaeota|Rep: 50S ribosomal protein L14e -
Methanococcus jannaschii
Length = 80
Score = 39.5 bits (88), Expect = 0.12
Identities = 18/48 (37%), Positives = 27/48 (56%)
Frame = +3
Query: 468 PNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRI 611
P +++G VCI AGR AGK V+V IL ++V G C ++ +
Sbjct: 2 PAIEVGRVCIKTAGREAGKVCVIVDILDKNFVIVDGLVKRRRCNIKHL 49
>UniRef50_A7QIH5 Cluster: Chromosome chr12 scaffold_103, whole
genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr12 scaffold_103, whole genome shotgun
sequence - Vitis vinifera (Grape)
Length = 345
Score = 39.1 bits (87), Expect = 0.16
Identities = 26/69 (37%), Positives = 39/69 (56%)
Frame = +3
Query: 393 FYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVT 572
FYP + ++ + +K ++ +R ++ GTV I+LAGR VV + L SGLLL+T
Sbjct: 207 FYPADD-VKKPLINKHKAKPIK-LRASITPGTVLIILAGR-----VVFLKQLSSGLLLIT 259
Query: 573 GPFAFNSCP 599
G F N P
Sbjct: 260 GSFKINDVP 268
>UniRef50_Q8ZYB4 Cluster: 50S ribosomal protein L14e; n=14;
Archaea|Rep: 50S ribosomal protein L14e - Pyrobaculum
aerophilum
Length = 103
Score = 37.9 bits (84), Expect = 0.38
Identities = 17/60 (28%), Positives = 32/60 (53%)
Frame = +3
Query: 474 LKIGTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRIPQRYVICTSTRISL 653
+ IG V + + GR AG++ V+V I+ +++TGP RR+ ++ T +I +
Sbjct: 5 IDIGRVVVKVLGREAGRKAVVVDIVDENYVVITGPKPITGVKRRRVNINHIEPTDKKIDI 64
>UniRef50_A0N0S1 Cluster: 60S ribosomal protein L6; n=1;
Strongyloides papillosus|Rep: 60S ribosomal protein L6 -
Strongyloides papillosus
Length = 127
Score = 36.7 bits (81), Expect = 0.87
Identities = 15/32 (46%), Positives = 22/32 (68%)
Frame = +3
Query: 558 LLLVTGPFAFNSCPLRRIPQRYVICTSTRISL 653
L GPF+ N P+RRI Q++V+ TST+I +
Sbjct: 10 LFTFLGPFSINGVPVRRIAQKFVLPTSTKIDV 41
>UniRef50_Q4ZTN3 Cluster: Sensor protein; n=5; Pseudomonas|Rep:
Sensor protein - Pseudomonas syringae pv. syringae
(strain B728a)
Length = 676
Score = 33.9 bits (74), Expect = 6.1
Identities = 19/53 (35%), Positives = 31/53 (58%)
Frame = +3
Query: 432 GRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFN 590
GR ++ R++RP LK+ + + G +A V G L +G+ L+T PFAF+
Sbjct: 617 GRQLAEIARQLRPELKV----LFITG-YAEHAAVRGGFLDTGMQLITKPFAFD 664
>UniRef50_Q98RL7 Cluster: 60S ribosomal protein L6B; n=1; Guillardia
theta|Rep: 60S ribosomal protein L6B - Guillardia theta
(Cryptomonas phi)
Length = 169
Score = 33.9 bits (74), Expect = 6.1
Identities = 17/53 (32%), Positives = 28/53 (52%)
Frame = +3
Query: 471 NLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRIPQRYVI 629
+ KIG + I+ + GK+ V +G G LL++G FN +I +YV+
Sbjct: 41 DFKIGDILIIKKRNNYGKKCVFLGHTDDGNLLLSGIMKFNGIGYLKIHWKYVV 93
>UniRef50_A7ET80 Cluster: Putative uncharacterized protein; n=1;
Sclerotinia sclerotiorum 1980|Rep: Putative
uncharacterized protein - Sclerotinia sclerotiorum 1980
Length = 752
Score = 33.9 bits (74), Expect = 6.1
Identities = 18/44 (40%), Positives = 22/44 (50%)
Frame = +3
Query: 348 KNGGTRTVPLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLK 479
K R LK SF P + + ASS GRP K +R+R LK
Sbjct: 128 KEDHNREEELKAMVSFMPHRPAVDASSSGRPMKKDSKRMRNGLK 171
>UniRef50_Q5KML3 Cluster: VpsB, putative; n=2; Basidiomycota|Rep:
VpsB, putative - Cryptococcus neoformans (Filobasidiella
neoformans)
Length = 686
Score = 33.5 bits (73), Expect = 8.1
Identities = 16/45 (35%), Positives = 26/45 (57%)
Frame = -2
Query: 547 RIPTSTTLLPACLPARRMQTVPIFRLGRILRTCLLNGRPPDEARI 413
R+P+ L A L A R Q P ++ +++ T + NG PP+ AR+
Sbjct: 397 RVPSPNKLRLAILYALRYQKSPSAQIPQVVSTLISNGVPPERARL 441
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 789,202,107
Number of Sequences: 1657284
Number of extensions: 15218501
Number of successful extensions: 36173
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 34845
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36153
length of database: 575,637,011
effective HSP length: 101
effective length of database: 408,251,327
effective search space used: 87774035305
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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