Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_E18
         (950 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13636| Best HMM Match : Ribosomal_L6e (HMM E-Value=0)               39   0.005
SB_46132| Best HMM Match : No HMM Matches (HMM E-Value=.)              35   0.11 
SB_14386| Best HMM Match : Ion_trans_2 (HMM E-Value=2.4e-11)           29   5.5  
SB_47767| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   7.3  
SB_48087| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   7.3  
SB_4086| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   7.3  

>SB_13636| Best HMM Match : Ribosomal_L6e (HMM E-Value=0)
          Length = 112

 Score = 39.1 bits (87), Expect = 0.005
 Identities = 17/26 (65%), Positives = 18/26 (69%)
 Frame = +3

Query: 576 PFAFNSCPLRRIPQRYVICTSTRISL 653
           PF  N  PLRRIPQ YVI TST I +
Sbjct: 2   PFKINGVPLRRIPQSYVIATSTHIDV 27


>SB_46132| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1000

 Score = 34.7 bits (76), Expect = 0.11
 Identities = 24/57 (42%), Positives = 32/57 (56%), Gaps = 3/57 (5%)
 Frame = +2

Query: 602 TPHSSALCDLHLHQNFTRATSNCQNTSMMITSRRIRSASNVQ---SNAKRVMTSLPQ 763
           TPH   L +  L+QN  +ATSN Q     ITS   +S SNVQ   SNA+   +++ Q
Sbjct: 306 TPHDQNLQERSLNQNAQQATSNAQ----QITSNAQQSTSNVQQATSNAQLATSNVQQ 358


>SB_14386| Best HMM Match : Ion_trans_2 (HMM E-Value=2.4e-11)
          Length = 556

 Score = 29.1 bits (62), Expect = 5.5
 Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 6/71 (8%)
 Frame = +2

Query: 566 SYWTFCIQFVPATPH----SSALCDLHLHQNFTRAT--SNCQNTSMMITSRRIRSASNVQ 727
           S+    I ++P  PH    +S   D  LH  FT+A    NC  T+++     + S+S ++
Sbjct: 29  SFPNLTINWLPFMPHIEQNASGGVDGDLHNYFTKAQFQCNCPQTNLLFNKLNVSSSSAME 88

Query: 728 SNAKRVMTSLP 760
              +R   + P
Sbjct: 89  IAIRRTPYNTP 99


>SB_47767| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 113

 Score = 28.7 bits (61), Expect = 7.3
 Identities = 11/16 (68%), Positives = 11/16 (68%)
 Frame = +3

Query: 597 PLRRIPQRYVICTSTR 644
           PLRR P RY IC  TR
Sbjct: 29  PLRRTPDRYAICDDTR 44


>SB_48087| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1396

 Score = 28.7 bits (61), Expect = 7.3
 Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
 Frame = +2

Query: 359 NQNSTPQ---T*EVLLPHSGENPCLIWWPSIQQACTQDPTQP 475
           NQ++ PQ   T  VL+PH G  PC+  +P+         TQP
Sbjct: 94  NQSTLPQGNATQWVLIPHKGSMPCIGTFPNAINTWIIPGTQP 135


>SB_4086| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2235

 Score = 28.7 bits (61), Expect = 7.3
 Identities = 11/16 (68%), Positives = 11/16 (68%)
 Frame = +3

Query: 597 PLRRIPQRYVICTSTR 644
           PLRR P RY IC  TR
Sbjct: 33  PLRRTPDRYAICDDTR 48



 Score = 28.7 bits (61), Expect = 7.3
 Identities = 11/16 (68%), Positives = 11/16 (68%)
 Frame = +3

Query: 597 PLRRIPQRYVICTSTR 644
           PLRR P RY IC  TR
Sbjct: 106 PLRRTPDRYAICDDTR 121


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,627,707
Number of Sequences: 59808
Number of extensions: 500697
Number of successful extensions: 1227
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1222
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2788625034
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)