Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_E18
         (950 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g74060.1 68414.m08578 60S ribosomal protein L6 (RPL6B) simila...    86   3e-17
At1g74050.1 68414.m08576 60S ribosomal protein L6 (RPL6C) simila...    86   3e-17
At1g18540.1 68414.m02313 60S ribosomal protein L6 (RPL6A) simila...    83   3e-16
At1g63560.1 68414.m07185 receptor-like protein kinase-related co...    33   0.21 
At2g29210.1 68415.m03550 splicing factor PWI domain-containing p...    30   2.6  
At3g21250.1 68416.m02685 ABC transporter family protein similar ...    29   4.5  
At1g20540.1 68414.m02559 transducin family protein / WD-40 repea...    29   6.0  
At2g27270.1 68415.m03277 expressed protein                             28   7.9  

>At1g74060.1 68414.m08578 60S ribosomal protein L6 (RPL6B) similar
           to 60S ribosomal protein L6 (YL 16 like) GB:CAB57309
           from [Cyanophora paradoxa]
          Length = 233

 Score = 86.2 bits (204), Expect = 3e-17
 Identities = 55/152 (36%), Positives = 81/152 (53%)
 Frame = +3

Query: 198 RNYDLGNGVMRFSKSKMFHKKAKYKFIGXXXXXXXXXXXLTVVVKQIGGEKNGGTRTVPL 377
           RN DL  GV ++S+S+M+HK+  +                + V               P+
Sbjct: 12  RNPDLIRGVGKYSRSQMYHKRGLWAIKAKNGGVFPRHDAKSKV-------------DAPV 58

Query: 378 KRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSG 557
           ++   FYP ++ ++     R  +K  + +R ++  GTV I+LAGR  GKRVV +  L SG
Sbjct: 59  EKPPKFYPAED-VKKPLPNRRTAKPAK-LRASITPGTVLIILAGRFKGKRVVFLKQLASG 116

Query: 558 LLLVTGPFAFNSCPLRRIPQRYVICTSTRISL 653
           LLLVTGPF  N  PLRR+ Q YVI TST++ +
Sbjct: 117 LLLVTGPFKINGVPLRRVNQAYVIGTSTKVDI 148


>At1g74050.1 68414.m08576 60S ribosomal protein L6 (RPL6C) similar
           to 60S ribosomal protein L6 (YL 16 like) GB:CAB57309
           from [Cyanophora paradoxa]
          Length = 233

 Score = 86.2 bits (204), Expect = 3e-17
 Identities = 55/152 (36%), Positives = 81/152 (53%)
 Frame = +3

Query: 198 RNYDLGNGVMRFSKSKMFHKKAKYKFIGXXXXXXXXXXXLTVVVKQIGGEKNGGTRTVPL 377
           RN DL  GV ++S+S+M+HK+  +                + V               P+
Sbjct: 12  RNPDLIRGVGKYSRSQMYHKRGLWAIKAKNGGVFPRHDAKSKV-------------DAPV 58

Query: 378 KRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSG 557
           ++   FYP ++ ++     R  +K  + +R ++  GTV I+LAGR  GKRVV +  L SG
Sbjct: 59  EKPPKFYPAED-VKKPLPNRRTAKPTK-LRASITPGTVLIILAGRFKGKRVVFLKQLASG 116

Query: 558 LLLVTGPFAFNSCPLRRIPQRYVICTSTRISL 653
           LLLVTGPF  N  PLRR+ Q YVI TST++ +
Sbjct: 117 LLLVTGPFKINGVPLRRVNQAYVIGTSTKVDI 148


>At1g18540.1 68414.m02313 60S ribosomal protein L6 (RPL6A) similar
           to 60S ribosomal protein L6 GI:7208784 from [Cicer
           arietinum]
          Length = 233

 Score = 83.0 bits (196), Expect = 3e-16
 Identities = 55/152 (36%), Positives = 79/152 (51%)
 Frame = +3

Query: 198 RNYDLGNGVMRFSKSKMFHKKAKYKFIGXXXXXXXXXXXLTVVVKQIGGEKNGGTRTVPL 377
           RN DL  GV ++S+S+M+HK+  +                  V               P+
Sbjct: 12  RNPDLIRGVGKYSRSQMYHKRGLWAIKAKNGGVFPRHDAQPKV-------------DAPV 58

Query: 378 KRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSG 557
           ++   FYP ++ ++     R   K  + ++ ++  GTV I+LAGR  GKRVV +  L SG
Sbjct: 59  EKPAKFYPAED-VKKPLVNRRKPKPTK-LKASITPGTVLIILAGRFKGKRVVFLKQLSSG 116

Query: 558 LLLVTGPFAFNSCPLRRIPQRYVICTSTRISL 653
           LLLVTGPF  N  PLRR+ Q YVI TST+I +
Sbjct: 117 LLLVTGPFKINGVPLRRVNQAYVIGTSTKIDI 148


>At1g63560.1 68414.m07185 receptor-like protein kinase-related
           contains Pfam profile: PF01657 Domain of unknown
           function DUF26; weak similarity to receptor-like protein
           kinase 5 (GI:13506747) [Arabidopsis thaliana]
          Length = 273

 Score = 33.5 bits (73), Expect = 0.21
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = +2

Query: 608 HSSALCDLHLHQNFTRATSNCQNTSMMITSRRIRSASNVQSNA 736
           H +  CD  L  NFT+ +S   N   +++S R RS+    SNA
Sbjct: 6   HMATFCDDRLSDNFTQTSSYKANRETLLSSLRDRSSLGTYSNA 48


>At2g29210.1 68415.m03550 splicing factor PWI domain-containing
           protein contains Pfam profile PF01480: PWI domain
          Length = 878

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 12/31 (38%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
 Frame = +3

Query: 372 PLKRRKSFYPTQEKIRASSGGRPFS-KHVRR 461
           P++RR+S  P +E++  S GGR  S  H+++
Sbjct: 525 PVRRRRSLTPDEERVSLSQGGRHTSPSHIKQ 555


>At3g21250.1 68416.m02685 ABC transporter family protein similar to
           MRP-like ABC transporter GB:AAC49791 from [Arabidopsis
           thaliana]
          Length = 1294

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = +2

Query: 620 LCDLHLHQNFTRATSNCQNTSMMITSRRIRSASNVQSNAK 739
           LC L L+  F +   NCQ   M+   +R+RS S + ++ K
Sbjct: 273 LCGL-LNLPFAKMLQNCQTQFMIAQDKRLRSTSEILNSMK 311


>At1g20540.1 68414.m02559 transducin family protein / WD-40 repeat
           family protein contains 6 WD-40 repeats (PF00400);
           similar to Rbap46 polypeptide (GI:9454362) [Gallus
           gallus]
          Length = 351

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
 Frame = +2

Query: 338 WR*EEWGNQNSTPQT*EV--LLPHSGENPCLIWWPS 439
           W+  E   Q ++PQ   V  L  H G+  C++WWPS
Sbjct: 96  WQIPELYGQLNSPQLERVASLDAHVGKINCVLWWPS 131


>At2g27270.1 68415.m03277 expressed protein
          Length = 231

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 21/74 (28%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
 Frame = +3

Query: 399 PTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVTGP 578
           PT++K  A   G   SKH R +  +    + C+       GK ++  G+  + +LL+   
Sbjct: 21  PTKKKTEAKEEGAAASKHSRVVYSD---KSRCL----SKNGKTIIYFGVPAALILLIICV 73

Query: 579 FAFNSCPLR-RIPQ 617
           FAFN   ++ R+P+
Sbjct: 74  FAFNYIAIQPRVPR 87


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,365,778
Number of Sequences: 28952
Number of extensions: 350466
Number of successful extensions: 794
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 778
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 794
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2285480280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)