Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_E15
         (884 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_1239 - 27275110-27275445                                         31   1.6  
02_05_0595 - 30225747-30226589,30227248-30227386,30228734-30228849     28   8.7  

>12_02_1239 - 27275110-27275445
          Length = 111

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = +1

Query: 682 RTIXIPGVSPWKA-PSCAPXVPDPAVYRIPVR 774
           R +  P   PW+A PS AP    P VYR+  R
Sbjct: 18  RAVQKPPAKPWRASPSAAPGPAPPKVYRVEPR 49


>02_05_0595 - 30225747-30226589,30227248-30227386,30228734-30228849
          Length = 365

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +1

Query: 694 IPGVSPWKAPSCAPXVPDPAVY 759
           +P  + W A SC   VPDP VY
Sbjct: 342 VPPAAYWNAGSCWTDVPDPNVY 363


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,064,399
Number of Sequences: 37544
Number of extensions: 281917
Number of successful extensions: 656
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 633
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 654
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2503236492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)