Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_E13
         (938 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch...    66   5e-12
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar...    66   9e-12
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|...    41   3e-04
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces...    27   3.8  

>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 455

 Score = 66.5 bits (155), Expect = 5e-12
 Identities = 28/34 (82%), Positives = 30/34 (88%)
 Frame = +1

Query: 184 HVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKN 285
           HVGQAGVQIGNACWELYCLEHGI PDG  PT+ +
Sbjct: 8   HVGQAGVQIGNACWELYCLEHGIGPDG-FPTENS 40


>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
           2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 449

 Score = 65.7 bits (153), Expect = 9e-12
 Identities = 26/29 (89%), Positives = 27/29 (93%)
 Frame = +1

Query: 184 HVGQAGVQIGNACWELYCLEHGIQPDGQM 270
           HVGQAG QIGNACWELYCLEHGIQP+G M
Sbjct: 8   HVGQAGTQIGNACWELYCLEHGIQPNGYM 36


>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 446

 Score = 40.7 bits (91), Expect = 3e-04
 Identities = 16/27 (59%), Positives = 19/27 (70%)
 Frame = +1

Query: 190 GQAGVQIGNACWELYCLEHGIQPDGQM 270
           GQ G QIG+  W+  CLEHGI PDG +
Sbjct: 11  GQCGNQIGSQFWQQLCLEHGIGPDGTL 37


>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 448

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = +1

Query: 190 GQAGVQIGNACWELYCLEHGIQPDG 264
           GQ G Q+G A W     EHG+   G
Sbjct: 10  GQCGNQVGAAFWSTIADEHGLDSAG 34


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,127,263
Number of Sequences: 5004
Number of extensions: 17091
Number of successful extensions: 44
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 44
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 477327454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)