Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP01_F_E13
(938 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_02_0058 + 7879859-7879951,7880844-7881078,7881165-7881535,788... 77 2e-14
03_05_0974 + 29324025-29324117,29325064-29325298,29325385-293257... 74 1e-13
07_03_0994 + 23190344-23190456,23191367-23191581,23191663-231918... 73 4e-13
03_02_0186 - 6243487-6243799,6243892-6244400,6244495-6244557,624... 71 1e-12
05_04_0306 + 20058640-20059159,20060406-20060819,20060921-200611... 38 0.012
01_02_0004 - 10097759-10098438,10098973-10099242,10099956-10100349 38 0.012
05_01_0412 - 3248405-3248458,3248533-3248637,3248950-3249078,324... 37 0.020
01_06_1060 + 34162161-34162554,34162613-34162675,34163262-341635... 37 0.027
03_05_0575 + 25747813-25748206,25748567-25748614,25750296-257505... 36 0.046
03_01_0034 + 318432-318825,318902-319851 36 0.046
06_03_1086 - 27494238-27494914,27495471-27495740,27495986-27496379 34 0.14
03_06_0176 + 32158462-32158855,32159960-32160229,32160328-32160998 34 0.14
02_01_0499 + 3619909-3620302,3621123-3621392,3621788-3622467 34 0.14
>11_02_0058 +
7879859-7879951,7880844-7881078,7881165-7881535,
7881648-7882304
Length = 451
Score = 77.4 bits (182), Expect = 2e-14
Identities = 31/41 (75%), Positives = 36/41 (87%)
Frame = +1
Query: 160 KCVSASLXHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDK 282
+C+S H+GQAG+Q+GNACWELYCLEHGIQPDGQMP DK
Sbjct: 3 ECISI---HIGQAGIQVGNACWELYCLEHGIQPDGQMPGDK 40
>03_05_0974 +
29324025-29324117,29325064-29325298,29325385-29325755,
29325864-29326520
Length = 451
Score = 74.1 bits (174), Expect = 1e-13
Identities = 29/41 (70%), Positives = 36/41 (87%)
Frame = +1
Query: 160 KCVSASLXHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDK 282
+C+S H+GQAG+Q+GNACWELYCLEHGIQ DGQMP+D+
Sbjct: 3 ECISI---HIGQAGIQVGNACWELYCLEHGIQADGQMPSDR 40
>07_03_0994 +
23190344-23190456,23191367-23191581,23191663-23191862,
23192420-23192928,23193048-23193363
Length = 450
Score = 72.5 bits (170), Expect = 4e-13
Identities = 26/32 (81%), Positives = 31/32 (96%)
Frame = +1
Query: 184 HVGQAGVQIGNACWELYCLEHGIQPDGQMPTD 279
H+GQAG+Q+GNACWELYCLEHGI+PDG MP+D
Sbjct: 8 HIGQAGIQVGNACWELYCLEHGIEPDGTMPSD 39
>03_02_0186 -
6243487-6243799,6243892-6244400,6244495-6244557,
6245482-6245681,6246125-6246519,6246776-6246888
Length = 530
Score = 71.3 bits (167), Expect = 1e-12
Identities = 26/32 (81%), Positives = 30/32 (93%)
Frame = +1
Query: 184 HVGQAGVQIGNACWELYCLEHGIQPDGQMPTD 279
H+GQAG+Q+GN+CWELYCLEHGIQPDG MP D
Sbjct: 8 HIGQAGIQVGNSCWELYCLEHGIQPDGLMPRD 39
>05_04_0306 +
20058640-20059159,20060406-20060819,20060921-20061190,
20062179-20062849
Length = 624
Score = 37.9 bits (84), Expect = 0.012
Identities = 15/26 (57%), Positives = 18/26 (69%)
Frame = +1
Query: 190 GQAGVQIGNACWELYCLEHGIQPDGQ 267
GQ G QIG+ WE+ C EHGI P G+
Sbjct: 190 GQCGNQIGSKFWEVVCDEHGIDPTGR 215
>01_02_0004 - 10097759-10098438,10098973-10099242,10099956-10100349
Length = 447
Score = 37.9 bits (84), Expect = 0.012
Identities = 15/26 (57%), Positives = 18/26 (69%)
Frame = +1
Query: 190 GQAGVQIGNACWELYCLEHGIQPDGQ 267
GQ G QIG+ WE+ C EHGI P G+
Sbjct: 10 GQCGNQIGSKFWEVVCDEHGIDPTGR 35
>05_01_0412 -
3248405-3248458,3248533-3248637,3248950-3249078,
3249279-3249353,3249520-3249624,3249714-3249767,
3249970-3250370,3250583-3250694,3250886-3251086,
3251844-3251972
Length = 454
Score = 37.1 bits (82), Expect = 0.020
Identities = 16/26 (61%), Positives = 17/26 (65%)
Frame = +1
Query: 187 VGQAGVQIGNACWELYCLEHGIQPDG 264
VGQ G QIG W+ CLEHGI DG
Sbjct: 10 VGQCGNQIGMEFWKQLCLEHGIGKDG 35
>01_06_1060 +
34162161-34162554,34162613-34162675,34163262-34163531,
34163944-34164623
Length = 468
Score = 36.7 bits (81), Expect = 0.027
Identities = 15/26 (57%), Positives = 17/26 (65%)
Frame = +1
Query: 190 GQAGVQIGNACWELYCLEHGIQPDGQ 267
GQ G QIG WE+ C EHGI P G+
Sbjct: 10 GQCGNQIGAKFWEVVCDEHGIDPTGR 35
>03_05_0575 +
25747813-25748206,25748567-25748614,25750296-25750565,
25750658-25751334
Length = 462
Score = 35.9 bits (79), Expect = 0.046
Identities = 14/25 (56%), Positives = 16/25 (64%)
Frame = +1
Query: 190 GQAGVQIGNACWELYCLEHGIQPDG 264
GQ G QIG WE+ C EHG+ P G
Sbjct: 10 GQCGNQIGAKFWEVICGEHGVDPTG 34
>03_01_0034 + 318432-318825,318902-319851
Length = 447
Score = 35.9 bits (79), Expect = 0.046
Identities = 15/32 (46%), Positives = 18/32 (56%)
Frame = +1
Query: 190 GQAGVQIGNACWELYCLEHGIQPDGQMPTDKN 285
GQ G QIG WE+ C EHGI G+ D +
Sbjct: 10 GQCGNQIGAKFWEVVCAEHGIDATGRYDGDSD 41
>06_03_1086 - 27494238-27494914,27495471-27495740,27495986-27496379
Length = 446
Score = 34.3 bits (75), Expect = 0.14
Identities = 15/32 (46%), Positives = 18/32 (56%)
Frame = +1
Query: 190 GQAGVQIGNACWELYCLEHGIQPDGQMPTDKN 285
GQ G QIG WE+ C EHGI G+ D +
Sbjct: 10 GQCGNQIGAKFWEVICDEHGIDHTGKYSGDSD 41
>03_06_0176 + 32158462-32158855,32159960-32160229,32160328-32160998
Length = 444
Score = 34.3 bits (75), Expect = 0.14
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +1
Query: 190 GQAGVQIGNACWELYCLEHGIQPDGQMPTDKN 285
GQ G QIG WE+ C EHG+ G+ D +
Sbjct: 10 GQCGNQIGAKFWEVICDEHGVDATGRYAGDSD 41
>02_01_0499 + 3619909-3620302,3621123-3621392,3621788-3622467
Length = 447
Score = 34.3 bits (75), Expect = 0.14
Identities = 15/32 (46%), Positives = 18/32 (56%)
Frame = +1
Query: 190 GQAGVQIGNACWELYCLEHGIQPDGQMPTDKN 285
GQ G QIG WE+ C EHGI G+ D +
Sbjct: 10 GQCGNQIGAKFWEVICDEHGIDHTGKYSGDSD 41
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,806,268
Number of Sequences: 37544
Number of extensions: 123131
Number of successful extensions: 321
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 319
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 321
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2694390200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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