Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_E13
         (938 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U50468-1|AAA93472.1|   91|Anopheles gambiae protein ( Anopheles ...    37   0.001
AJ439353-11|CAD27933.1|  615|Anopheles gambiae 30E5.11 protein.        25   4.4  

>U50468-1|AAA93472.1|   91|Anopheles gambiae protein ( Anopheles
           gambiae putativetubulin alpha chain mRNA, complete cds.
           ).
          Length = 91

 Score = 36.7 bits (81), Expect = 0.001
 Identities = 15/23 (65%), Positives = 18/23 (78%)
 Frame = +1

Query: 160 KCVSASLXHVGQAGVQIGNACWE 228
           +C+S    HVGQAGVQIGN CW+
Sbjct: 3   ECISV---HVGQAGVQIGNPCWD 22



 Score = 28.3 bits (60), Expect = 0.35
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +2

Query: 218 PAGSFTAWSTASSLMARCPQTR 283
           P    T WS AS+   RCP+TR
Sbjct: 19  PCWDCTVWSMASNRTVRCPRTR 40


>AJ439353-11|CAD27933.1|  615|Anopheles gambiae 30E5.11 protein.
          Length = 615

 Score = 24.6 bits (51), Expect = 4.4
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = -2

Query: 253 GCRAPGSKAPSRHYRSGLRLGQRVXEMHSR 164
           G  APGS+   RH R+G +  + + E++ +
Sbjct: 32  GSPAPGSRHSIRHGRNGDKRSRMIKELYQQ 61


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 297,794
Number of Sequences: 2352
Number of extensions: 4109
Number of successful extensions: 6
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 563,979
effective HSP length: 64
effective length of database: 413,451
effective search space used: 102535848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)