Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_E13
         (938 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   3.0  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   3.0  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    23   5.3  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.4 bits (48), Expect = 3.0
 Identities = 15/57 (26%), Positives = 25/57 (43%)
 Frame = -1

Query: 242  SRQ*SSQQALPIWTPAWPTCXRDALTHFDLSFFLCLNVELNYNQSSFSATXLSGIAK 72
            +R  SS + L  W+P  P      +  F++ +    +   +YN SS S     G A+
Sbjct: 1015 ARALSSSEILITWSPPLPELRHGDIQGFNVGYRETSSSNPSYNFSSVSGDGEEGGAE 1071


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.4 bits (48), Expect = 3.0
 Identities = 15/57 (26%), Positives = 25/57 (43%)
 Frame = -1

Query: 242  SRQ*SSQQALPIWTPAWPTCXRDALTHFDLSFFLCLNVELNYNQSSFSATXLSGIAK 72
            +R  SS + L  W+P  P      +  F++ +    +   +YN SS S     G A+
Sbjct: 1011 ARALSSSEILITWSPPLPELRHGDIQGFNVGYRETSSSNPSYNFSSVSGDGEEGGAE 1067


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 22.6 bits (46), Expect = 5.3
 Identities = 8/10 (80%), Positives = 9/10 (90%)
 Frame = -2

Query: 226 PSRHYRSGLR 197
           P RHYRSGL+
Sbjct: 139 PLRHYRSGLK 148


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 78,572
Number of Sequences: 438
Number of extensions: 1239
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 30718506
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)