Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP01_F_E13
(938 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2) id... 79 6e-15
At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4) ne... 79 6e-15
At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly ide... 77 1e-14
At4g14960.1 68417.m02298 tubulin alpha-6 chain (TUA6) nearly ide... 77 1e-14
At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5) ne... 73 3e-13
At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3) ne... 73 3e-13
At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly ide... 73 4e-13
At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) near... 39 0.004
At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) near... 39 0.004
At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly iden... 38 0.010
At5g05620.1 68418.m00612 tubulin gamma-2 chain / gamma-2 tubulin... 38 0.010
At3g61650.1 68416.m06909 tubulin gamma-1 chain / gamma-1 tubulin... 38 0.010
At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly iden... 38 0.010
At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly iden... 36 0.051
At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly iden... 35 0.068
At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly iden... 35 0.068
At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8) ide... 35 0.090
At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical t... 33 0.21
At1g66690.1 68414.m07580 S-adenosyl-L-methionine:carboxyl methyl... 31 1.5
>At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2)
identical to tubulin alpha-2/alpha-4 chain SP|P29510
GB:P29510 from [Arabidopsis thaliana]
Length = 450
Score = 78.6 bits (185), Expect = 6e-15
Identities = 31/41 (75%), Positives = 37/41 (90%)
Frame = +1
Query: 160 KCVSASLXHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDK 282
+C+S H+GQAG+Q+GNACWELYCLEHGIQPDGQMP+DK
Sbjct: 3 ECISI---HIGQAGIQVGNACWELYCLEHGIQPDGQMPSDK 40
>At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4)
nearly identical to SP:P29510 Tubulin alpha-2/alpha-4
chain from [Arabidopsis thaliana]
Length = 450
Score = 78.6 bits (185), Expect = 6e-15
Identities = 31/41 (75%), Positives = 37/41 (90%)
Frame = +1
Query: 160 KCVSASLXHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDK 282
+C+S H+GQAG+Q+GNACWELYCLEHGIQPDGQMP+DK
Sbjct: 3 ECISI---HIGQAGIQVGNACWELYCLEHGIQPDGQMPSDK 40
>At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly
identical to SP|P29511 Tubulin alpha-6 chain
{Arabidopsis thaliana}
Length = 450
Score = 77.4 bits (182), Expect = 1e-14
Identities = 31/41 (75%), Positives = 36/41 (87%)
Frame = +1
Query: 160 KCVSASLXHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDK 282
+C+S H+GQAG+Q+GNACWELYCLEHGIQPDGQMP DK
Sbjct: 3 ECISI---HIGQAGIQVGNACWELYCLEHGIQPDGQMPGDK 40
>At4g14960.1 68417.m02298 tubulin alpha-6 chain (TUA6) nearly
identical to SP|P29511 Tubulin alpha-6 chain
{Arabidopsis thaliana}
Length = 427
Score = 77.4 bits (182), Expect = 1e-14
Identities = 31/41 (75%), Positives = 36/41 (87%)
Frame = +1
Query: 160 KCVSASLXHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDK 282
+C+S H+GQAG+Q+GNACWELYCLEHGIQPDGQMP DK
Sbjct: 3 ECISI---HIGQAGIQVGNACWELYCLEHGIQPDGQMPGDK 40
>At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 72.9 bits (171), Expect = 3e-13
Identities = 26/32 (81%), Positives = 31/32 (96%)
Frame = +1
Query: 184 HVGQAGVQIGNACWELYCLEHGIQPDGQMPTD 279
H+GQAG+Q+GN+CWELYCLEHGIQPDG MP+D
Sbjct: 8 HIGQAGIQVGNSCWELYCLEHGIQPDGMMPSD 39
>At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 72.9 bits (171), Expect = 3e-13
Identities = 26/32 (81%), Positives = 31/32 (96%)
Frame = +1
Query: 184 HVGQAGVQIGNACWELYCLEHGIQPDGQMPTD 279
H+GQAG+Q+GN+CWELYCLEHGIQPDG MP+D
Sbjct: 8 HIGQAGIQVGNSCWELYCLEHGIQPDGMMPSD 39
>At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly
identical to SP|P11139 Tubulin alpha-1 chain
{Arabidopsis thaliana}
Length = 450
Score = 72.5 bits (170), Expect = 4e-13
Identities = 26/32 (81%), Positives = 31/32 (96%)
Frame = +1
Query: 184 HVGQAGVQIGNACWELYCLEHGIQPDGQMPTD 279
H+GQAG+Q+GN+CWELYCLEHGIQPDG MP+D
Sbjct: 8 HIGQAGIQVGNSCWELYCLEHGIQPDGTMPSD 39
>At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 39.1 bits (87), Expect = 0.004
Identities = 16/32 (50%), Positives = 19/32 (59%)
Frame = +1
Query: 190 GQAGVQIGNACWELYCLEHGIQPDGQMPTDKN 285
GQ G QIG WE+ C EHGI P G+ D +
Sbjct: 10 GQCGNQIGAKFWEVVCAEHGIDPTGRYTGDSD 41
>At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 39.1 bits (87), Expect = 0.004
Identities = 16/32 (50%), Positives = 19/32 (59%)
Frame = +1
Query: 190 GQAGVQIGNACWELYCLEHGIQPDGQMPTDKN 285
GQ G QIG WE+ C EHGI P G+ D +
Sbjct: 10 GQCGNQIGAKFWEVVCAEHGIDPTGRYTGDSD 41
>At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly
identical to SP|P29514 Tubulin beta-6 chain {Arabidopsis
thaliana}
Length = 449
Score = 37.9 bits (84), Expect = 0.010
Identities = 15/26 (57%), Positives = 18/26 (69%)
Frame = +1
Query: 190 GQAGVQIGNACWELYCLEHGIQPDGQ 267
GQ G QIG+ WE+ C EHGI P G+
Sbjct: 10 GQCGNQIGSKFWEVVCDEHGIDPTGR 35
>At5g05620.1 68418.m00612 tubulin gamma-2 chain / gamma-2 tubulin
(TUBG2) identical to SP|P38558 Tubulin gamma-2 chain
(Gamma-2 tubulin) {Arabidopsis thaliana}
Length = 474
Score = 37.9 bits (84), Expect = 0.010
Identities = 16/26 (61%), Positives = 17/26 (65%)
Frame = +1
Query: 187 VGQAGVQIGNACWELYCLEHGIQPDG 264
VGQ G QIG W+ CLEHGI DG
Sbjct: 10 VGQCGNQIGMEFWKQLCLEHGISKDG 35
>At3g61650.1 68416.m06909 tubulin gamma-1 chain / gamma-1 tubulin
(TUBG1) identical to SP|P38557 Tubulin gamma-1 chain
(Gamma-1 tubulin) {Arabidopsis thaliana}
Length = 474
Score = 37.9 bits (84), Expect = 0.010
Identities = 16/26 (61%), Positives = 17/26 (65%)
Frame = +1
Query: 187 VGQAGVQIGNACWELYCLEHGIQPDG 264
VGQ G QIG W+ CLEHGI DG
Sbjct: 10 VGQCGNQIGMEFWKQLCLEHGISKDG 35
>At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly
identical to SP|P12411 Tubulin beta-1 chain {Arabidopsis
thaliana}
Length = 447
Score = 37.9 bits (84), Expect = 0.010
Identities = 15/30 (50%), Positives = 19/30 (63%)
Frame = +1
Query: 190 GQAGVQIGNACWELYCLEHGIQPDGQMPTD 279
GQ G QIG+ WE+ C EHG+ P G+ D
Sbjct: 10 GQCGNQIGSKFWEVICDEHGVDPTGRYNGD 39
>At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly
identical to SP|P29513 Tubulin beta-5 chain {Arabidopsis
thaliana}
Length = 449
Score = 35.5 bits (78), Expect = 0.051
Identities = 15/30 (50%), Positives = 18/30 (60%)
Frame = +1
Query: 190 GQAGVQIGNACWELYCLEHGIQPDGQMPTD 279
GQ G QIG+ WE+ C EHGI G+ D
Sbjct: 10 GQCGNQIGSKFWEVICDEHGIDSTGRYSGD 39
>At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly
identical to SP|P24636 Tubulin beta-4 chain {Arabidopsis
thaliana}
Length = 444
Score = 35.1 bits (77), Expect = 0.068
Identities = 16/30 (53%), Positives = 17/30 (56%)
Frame = +1
Query: 190 GQAGVQIGNACWELYCLEHGIQPDGQMPTD 279
GQ G QIG WE+ C EHGI GQ D
Sbjct: 10 GQCGNQIGAKFWEVICDEHGIDHTGQYVGD 39
>At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly
identical to SP|P29517 Tubulin beta-9 chain {Arabidopsis
thaliana}
Length = 444
Score = 35.1 bits (77), Expect = 0.068
Identities = 15/26 (57%), Positives = 16/26 (61%)
Frame = +1
Query: 190 GQAGVQIGNACWELYCLEHGIQPDGQ 267
GQ G QIG WE+ C EHGI GQ
Sbjct: 10 GQCGNQIGAKFWEVICGEHGIDQTGQ 35
>At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8)
identical to SP|P29516 Tubulin beta-8 chain {Arabidopsis
thaliana}; supporting cDNA gi|15451225|gb|AY054693.1|
Length = 449
Score = 34.7 bits (76), Expect = 0.090
Identities = 14/26 (53%), Positives = 16/26 (61%)
Frame = +1
Query: 190 GQAGVQIGNACWELYCLEHGIQPDGQ 267
GQ G QIG WE+ C EHGI G+
Sbjct: 10 GQCGNQIGAKFWEVVCAEHGIDSTGR 35
>At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical to
GB:M84704 SP|P29515 Tubulin beta-7 chain {Arabidopsis
thaliana}
Length = 449
Score = 33.5 bits (73), Expect = 0.21
Identities = 15/30 (50%), Positives = 18/30 (60%)
Frame = +1
Query: 190 GQAGVQIGNACWELYCLEHGIQPDGQMPTD 279
GQ G QIG+ WE+ LEHGI G+ D
Sbjct: 10 GQCGNQIGSKFWEVVNLEHGIDQTGRYVGD 39
>At1g66690.1 68414.m07580 S-adenosyl-L-methionine:carboxyl
methyltransferase family protein similar to
defense-related protein cjs1 [Brassica
carinata][GI:14009292][Mol Plant Pathol (2001)
2(3):159-169]
Length = 353
Score = 30.7 bits (66), Expect = 1.5
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = -3
Query: 270 HLAIRLDAVLQAVKLPAGITDLDSGLANVXQRCT 169
H+A+ A L K+P GI D DS L N +CT
Sbjct: 140 HIAVMSYAFLFTSKIPKGIMDRDSPLWNKDMQCT 173
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,054,252
Number of Sequences: 28952
Number of extensions: 93982
Number of successful extensions: 210
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 209
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 210
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2246578488
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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