Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_E12
         (945 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0962 + 33114226-33114684,33114806-33114853,33115166-331152...    30   3.1  
01_01_0716 - 5548908-5549235,5549327-5549768,5549847-5549982           30   3.1  
06_03_0757 + 24267599-24268882                                         29   4.1  
12_02_1111 - 26157796-26160330                                         28   9.4  

>02_05_0962 +
           33114226-33114684,33114806-33114853,33115166-33115286,
           33115760-33116008,33116149-33116302,33116493-33116985,
           33117524-33117596,33118285-33118343
          Length = 551

 Score = 29.9 bits (64), Expect = 3.1
 Identities = 11/18 (61%), Positives = 11/18 (61%)
 Frame = -1

Query: 462 GGGGFFXXRKTXPPPPXR 409
           GGGGF   R   PPPP R
Sbjct: 57  GGGGFLRLRSAPPPPPSR 74


>01_01_0716 - 5548908-5549235,5549327-5549768,5549847-5549982
          Length = 301

 Score = 29.9 bits (64), Expect = 3.1
 Identities = 17/57 (29%), Positives = 19/57 (33%)
 Frame = -1

Query: 939 GGGAPXP*XGG*TPXGXXXXGXXFPHRXRXGXGXSXXGPGXXNXGGLWGGSXGXRXG 769
           GG  P P  GG  P      G   P     G G     P   + GG +G S     G
Sbjct: 97  GGALPSPSHGGAAPSHGGGYGASPPVTPSPGGGYGGGSPAPSHGGGAYGSSPSTPSG 153


>06_03_0757 + 24267599-24268882
          Length = 427

 Score = 29.5 bits (63), Expect = 4.1
 Identities = 21/55 (38%), Positives = 21/55 (38%), Gaps = 5/55 (9%)
 Frame = -1

Query: 939 GGGAPXP*XGG*T-----PXGXXXXGXXFPHRXRXGXGXSXXGPGXXNXGGLWGG 790
           GGGA     GG T     P G    G     R R G G    G G  N GG  GG
Sbjct: 258 GGGARQTFPGGGTGGGGFPAGQARTGGNTNRRNRKGNGGRGGGNGGGNGGGSGGG 312


>12_02_1111 - 26157796-26160330
          Length = 844

 Score = 28.3 bits (60), Expect = 9.4
 Identities = 11/18 (61%), Positives = 11/18 (61%)
 Frame = -2

Query: 449 FFXXEKXPPPPPXAXKKK 396
           FF  E  PPPPP A  KK
Sbjct: 235 FFTKENLPPPPPPAPAKK 252


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,403,554
Number of Sequences: 37544
Number of extensions: 263184
Number of successful extensions: 973
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 566
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 841
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2717819680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)