Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_E12
         (945 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g26080.1 68418.m03103 proline-rich family protein contains pr...    29   4.5  
At1g26150.1 68414.m03192 protein kinase family protein similar t...    29   4.5  

>At5g26080.1 68418.m03103 proline-rich family protein contains
           proline-rich extensin domains, INTERPRO:IPR002965
          Length = 141

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 15/54 (27%), Positives = 19/54 (35%)
 Frame = +2

Query: 689 PPPRKNXLKKXSPXXXGXXTXXVXKIXPXRSPXXPPHXPPXLXXPGPXXXXPXP 850
           PPP ++ +    P              P  SP  PP  PP +  P P    P P
Sbjct: 44  PPPYRSPVTIPPPPPVYSRPVAFPPPPPIYSPPPPPIYPPPIYSPPPPPIYPPP 97


>At1g26150.1 68414.m03192 protein kinase family protein similar to
           Pto kinase interactor 1 GI:3668069 from [Lycopersicon
           esculentum]
          Length = 760

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 17/60 (28%), Positives = 21/60 (35%), Gaps = 1/60 (1%)
 Frame = +2

Query: 680 IXXPPPRKNXLKKXSPXXXGXXTXXVXKIXPXRSPXXPPHXPPXLXXPG-PXXXXPXPXL 856
           +  PPP  +      P      T  +    P  +P  PP  PP L  P  P    P P L
Sbjct: 115 VSSPPPESSP--PPPPPTEAPPTTPITSPSPPTNPPPPPESPPSLPAPDPPSNPLPPPKL 172


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,642,159
Number of Sequences: 28952
Number of extensions: 152479
Number of successful extensions: 412
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 227
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 371
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2266029384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)