Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_E11
         (886 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1393.06c |||rRNA processing protein Ipi1|Schizosaccharomyces...    54   2e-08
SPCC663.11 |||ww domain binding protein 11 |Schizosaccharomyces ...    28   1.5  
SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces ...    27   2.7  
SPAC1687.02 |||CAAX prenyl protease |Schizosaccharomyces pombe|c...    26   8.2  

>SPCC1393.06c |||rRNA processing protein Ipi1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 408

 Score = 54.4 bits (125), Expect = 2e-08
 Identities = 29/99 (29%), Positives = 48/99 (48%)
 Frame = +2

Query: 473 LITRLNHFNTNTRKDALDGLTELISAHPEILEKDLGLIIHGVSPMILNVEKIVXHESLKV 652
           L+  L H N N R++ L+ LT+ + +H  IL     L++   SP+IL+    V     + 
Sbjct: 62  LLGMLKHHNANQRQETLEKLTQYVLSHTSILTTSTALLLKLTSPLILDESSSVRDCLYRF 121

Query: 653 LHLILSNLSVEKIDPFFDVMSTFLRSAMTHINSRIXEDS 769
           L   +  +  E ++P   ++  +  S MTHI   I  DS
Sbjct: 122 LEKFIYIMGPELLEPNIGMIFLYTHSGMTHITPSIRNDS 160


>SPCC663.11 |||ww domain binding protein 11 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 278

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 14/44 (31%), Positives = 25/44 (56%)
 Frame = +2

Query: 419 RKRTEKEALSIRKLNVKELITRLNHFNTNTRKDALDGLTELISA 550
           RK+ ++E + +R+   K    RL+H N +  +  L  LT+L S+
Sbjct: 15  RKKKKREQIKVREERAKRHEERLSHRNMSQMERQLSELTQLESS 58


>SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 761

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
 Frame = +1

Query: 508 PERRSRWTHGTNFSSSGNFRKRFRTNYSWS---*SNDFE 615
           P R + +  GT  S+SGNF     +N  W+    SN FE
Sbjct: 98  PSRNNSYLQGTAESNSGNFANNSISNNCWNSAYNSNSFE 136


>SPAC1687.02 |||CAAX prenyl protease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 271

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -1

Query: 397 FLHFKICFSNICSFRKILFG 338
           F+H K C SN  ++R I+ G
Sbjct: 103 FIHLKDCLSNAIAWRNIIIG 122


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,848,149
Number of Sequences: 5004
Number of extensions: 49366
Number of successful extensions: 119
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)