Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_E11
         (886 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41007-21|AAK84502.1|  465|Caenorhabditis elegans Hypothetical p...    29   5.8  
U41007-20|AAA82275.1|  455|Caenorhabditis elegans Hypothetical p...    29   5.8  
AF016661-1|AAB66049.2|  514|Caenorhabditis elegans Hypothetical ...    29   5.8  
Z22181-4|CAA80182.1|  824|Caenorhabditis elegans Hypothetical pr...    28   7.7  

>U41007-21|AAK84502.1|  465|Caenorhabditis elegans Hypothetical
           protein C33H5.18b protein.
          Length = 465

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
 Frame = -1

Query: 415 LLFNDNFLHFKICFSNICSFRKILFGF-QFSLCL---FRLKKFLVTSCTRL 275
           +L  DNFLHF + +  + SF     GF  F L L   + +++F + + T L
Sbjct: 178 VLKKDNFLHFLVAYHRLVSFALYCIGFVSFVLSLRKGYYMRQFSLFAWTHL 228


>U41007-20|AAA82275.1|  455|Caenorhabditis elegans Hypothetical
           protein C33H5.18a protein.
          Length = 455

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
 Frame = -1

Query: 415 LLFNDNFLHFKICFSNICSFRKILFGF-QFSLCL---FRLKKFLVTSCTRL 275
           +L  DNFLHF + +  + SF     GF  F L L   + +++F + + T L
Sbjct: 168 VLKKDNFLHFLVAYHRLVSFALYCIGFVSFVLSLRKGYYMRQFSLFAWTHL 218


>AF016661-1|AAB66049.2|  514|Caenorhabditis elegans Hypothetical
           protein F02E11.2 protein.
          Length = 514

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = -1

Query: 391 HFKICFSNICSFRKILFGFQFSLCLFRLKKFLVTSCTRLWHGF 263
           HF   F  +  F ++L  F   LC+F  + F+ TSC+R W  F
Sbjct: 203 HFSPIFYFL-RFSQLLLLFCL-LCVFPPRTFMPTSCSRFWCSF 243


>Z22181-4|CAA80182.1|  824|Caenorhabditis elegans Hypothetical
           protein ZK632.5 protein.
          Length = 824

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 16/64 (25%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
 Frame = +2

Query: 431 EKEALSIRKLNVKELITRLNHFNTNTRKDALDGLTELISAHPEILEKDLGLI--IHGVSP 604
           E  + S    ++ E + +LN  + + R    D + E++SAH  ++ + + ++  I+  SP
Sbjct: 305 ESASTSYNFQSIVENLPKLNIHDASCRFQICDDIFEIVSAHYHVIREMIQVVGNINDYSP 364

Query: 605 MILN 616
           + LN
Sbjct: 365 IRLN 368


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,344,491
Number of Sequences: 27780
Number of extensions: 261919
Number of successful extensions: 594
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 576
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 594
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2234373834
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)