Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_E11
         (886 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g04680.1 68417.m00684 hypothetical protein                          50   3e-06
At5g06350.1 68418.m00711 expressed protein                             48   1e-05
At5g27010.1 68418.m03222 hypothetical protein                          40   0.002
At1g30240.1 68414.m03699 PELP1-related contains weak similarity ...    31   0.77 
At2g39090.1 68415.m04803 tetratricopeptide repeat (TPR)-containi...    28   7.2  
At5g64250.2 68418.m08072 2-nitropropane dioxygenase family / NPD...    28   9.5  
At5g64250.1 68418.m08071 2-nitropropane dioxygenase family / NPD...    28   9.5  

>At4g04680.1 68417.m00684 hypothetical protein
          Length = 261

 Score = 49.6 bits (113), Expect = 3e-06
 Identities = 30/107 (28%), Positives = 53/107 (49%), Gaps = 3/107 (2%)
 Frame = +2

Query: 431 EKEALSIRK--LNVKELITRLNHFNTNTRKDALDGLTELISAHPEILEKDLGLIIHGVSP 604
           EK  L+  K  L +K+L+ + +H N   RKDAL+GL +L+  HP  L+     II  +  
Sbjct: 36  EKSGLATSKKGLTLKDLLPQTSHCNAKLRKDALNGLKDLLKNHPAELQSHKYAIIQKLRE 95

Query: 605 MILNVEKIVXHESLKVLH-LILSNLSVEKIDPFFDVMSTFLRSAMTH 742
            I++ + +V     ++   +IL     +   P   ++  ++  AM H
Sbjct: 96  RIMDDDSLVRDALYQLFESVILPACKNDNQSPMVSLLMPYISCAMAH 142


>At5g06350.1 68418.m00711 expressed protein
          Length = 890

 Score = 47.6 bits (108), Expect = 1e-05
 Identities = 32/107 (29%), Positives = 52/107 (48%), Gaps = 3/107 (2%)
 Frame = +2

Query: 431 EKEALSIRK--LNVKELITRLNHFNTNTRKDALDGLTELISAHPEILEKDLGLIIHGVSP 604
           EK  L+  K  L +KEL+ + +H N   RKDAL G+ +L   HPE L+     II  +  
Sbjct: 55  EKSGLATSKKGLTLKELLPQTSHHNAKVRKDALYGIKDLFKNHPEELQSHKYAIIQKLRE 114

Query: 605 MILNVEKIVXHESLKVLHLILSNLSVEKIDPFF-DVMSTFLRSAMTH 742
            I + +K+V     ++  + +  L  E        ++  ++ SAM H
Sbjct: 115 RISDDDKLVRDVFYQLFDIDIFPLCKEDNQGLMVSLLMPYIFSAMAH 161


>At5g27010.1 68418.m03222 hypothetical protein
          Length = 863

 Score = 40.3 bits (90), Expect = 0.002
 Identities = 23/72 (31%), Positives = 36/72 (50%)
 Frame = +2

Query: 440 ALSIRKLNVKELITRLNHFNTNTRKDALDGLTELISAHPEILEKDLGLIIHGVSPMILNV 619
           A S + L + EL  R  H N   RKDAL G+ +L+  HP  L  +     H +  +I + 
Sbjct: 60  ATSKKGLTLLELKNRTGHPNAKVRKDALHGIKDLLKHHPAELLSNKYATTHKLRELITDD 119

Query: 620 EKIVXHESLKVL 655
           +K+V  +   +L
Sbjct: 120 DKLVRDDFYTLL 131


>At1g30240.1 68414.m03699 PELP1-related contains weak similarity to
           PELP1 [Homo sapiens] gi|21426922|gb|AAC17708
          Length = 873

 Score = 31.5 bits (68), Expect = 0.77
 Identities = 19/56 (33%), Positives = 37/56 (66%), Gaps = 5/56 (8%)
 Frame = +2

Query: 461 NVKELITRLNHFNTNTRKDALDGLTELISAHPEILEKD-----LGLIIHGVSPMIL 613
           ++ +L+TRL+ F+ NT+KDA+   ++LI    ++L++D     L  I+H +S ++L
Sbjct: 143 SISDLLTRLSRFS-NTKKDAVSHASKLILPIIKLLDEDSSEALLEGIVHLLSTIVL 197


>At2g39090.1 68415.m04803 tetratricopeptide repeat (TPR)-containing
           protein low similarity to prediabetic NOD sera-reactive
           autoantigen [Mus musculus] GI:6670773,
           anaphase-promoting complex subunit 7 [Homo sapiens]
           GI:6180015; contains Pfam profile PF00515: TPR Domain
          Length = 558

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 18/57 (31%), Positives = 29/57 (50%)
 Frame = +2

Query: 431 EKEALSIRKLNVKELITRLNHFNTNTRKDALDGLTELISAHPEILEKDLGLIIHGVS 601
           E E++  R L +  L+ +L H N+   + A+    E +   P +LE  +GL   GVS
Sbjct: 129 EMESVKTRSLEMNILMAKL-HRNSGYNRGAIAFYKECLRQCPYVLEAVIGLAELGVS 184


>At5g64250.2 68418.m08072 2-nitropropane dioxygenase family / NPD
           family contains Pfam profile PF03060: oxidoreductase,
           2-nitropropane dioxygenase (NPD) family
          Length = 333

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 19/57 (33%), Positives = 27/57 (47%)
 Frame = +2

Query: 524 DGLTELISAHPEILEKDLGLIIHGVSPMILNVEKIVXHESLKVLHLILSNLSVEKID 694
           D L ELI     + EK  G+ +    P  LN+ K +  E + VL L   + S E +D
Sbjct: 47  DYLRELIRKTKTLTEKPFGIGVVLAFPHDLNI-KTILEEKVAVLQLYWGDCSQELVD 102


>At5g64250.1 68418.m08071 2-nitropropane dioxygenase family / NPD
           family contains Pfam profile PF03060: oxidoreductase,
           2-nitropropane dioxygenase (NPD) family
          Length = 293

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 19/57 (33%), Positives = 27/57 (47%)
 Frame = +2

Query: 524 DGLTELISAHPEILEKDLGLIIHGVSPMILNVEKIVXHESLKVLHLILSNLSVEKID 694
           D L ELI     + EK  G+ +    P  LN+ K +  E + VL L   + S E +D
Sbjct: 7   DYLRELIRKTKTLTEKPFGIGVVLAFPHDLNI-KTILEEKVAVLQLYWGDCSQELVD 62


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,134,942
Number of Sequences: 28952
Number of extensions: 233212
Number of successful extensions: 453
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 450
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 453
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2071520424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)