Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_E10
         (930 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC577.02 |rpl3801|rpl38-1|60S ribosomal protein L38|Schizosacc...    79   7e-16
SPAC30D11.12 |rpl3802|rpl38-2, rps38|60S ribosomal protein L38|S...    76   8e-15
SPAC26F1.04c |etr1||enoyl-[acyl-carrier protein] reductase|Schiz...    31   0.18 
SPBC12C2.13c |fnx1|SPBC21D10.04c|MFS multidrug efflux transporte...    27   2.8  

>SPBC577.02 |rpl3801|rpl38-1|60S ribosomal protein
           L38|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 74

 Score = 79.4 bits (187), Expect = 7e-16
 Identities = 38/56 (67%), Positives = 47/56 (83%), Gaps = 1/56 (1%)
 Frame = +3

Query: 150 ARRKDAKSVKIKKNP-ENVKFKVRCSRFLYTLVITDKEKAEKLKQSLPPGLQVKEV 314
           ARRKDA S +IKKN  ++VKFK+RCS++LYTLV+ D +KAEKL+QSLPP L V EV
Sbjct: 15  ARRKDATSARIKKNTNKDVKFKLRCSKYLYTLVVADAKKAEKLRQSLPPDLTVTEV 70


>SPAC30D11.12 |rpl3802|rpl38-2, rps38|60S ribosomal protein
           L38|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 74

 Score = 75.8 bits (178), Expect = 8e-15
 Identities = 38/62 (61%), Positives = 45/62 (72%), Gaps = 1/62 (1%)
 Frame = +3

Query: 132 KTF*LKARRKDAKSVKIKKNPEN-VKFKVRCSRFLYTLVITDKEKAEKLKQSLPPGLQVK 308
           K F   A R DA S ++KKN    VKFK+RCSR+LYTLV+ D +KAEKL+QSLPP L V 
Sbjct: 9   KLFLQLAHRGDATSARVKKNQNKAVKFKLRCSRYLYTLVVADAKKAEKLRQSLPPALTVT 68

Query: 309 EV 314
           EV
Sbjct: 69  EV 70


>SPAC26F1.04c |etr1||enoyl-[acyl-carrier protein]
           reductase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 372

 Score = 31.5 bits (68), Expect = 0.18
 Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 3/53 (5%)
 Frame = +3

Query: 168 KSVKIKKN-PENVKFKVRCSRFLYTLVITDKEKAEK--LKQSLPPGLQVKEVK 317
           KS+ + +N P+  K K +      T+VITD+E  ++  +KQ +P  +Q  EVK
Sbjct: 200 KSINVVRNRPDIEKLKEQLKSLGATIVITDEELMDRKTMKQKVPEWIQGGEVK 252


>SPBC12C2.13c |fnx1|SPBC21D10.04c|MFS multidrug efflux
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 531

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -3

Query: 253 SVMTRVYRNLEHRTLNLTFSGFFFILTDLASFLLALS 143
           S+ + +Y     R  NL  +GFFF+L  + SF +  S
Sbjct: 344 SLCSGLYMKKTGRYRNLVIAGFFFMLMGIVSFAVLTS 380


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,353,914
Number of Sequences: 5004
Number of extensions: 22805
Number of successful extensions: 48
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 47
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 471335896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)