Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_E10
         (930 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z26876-1|CAA81488.1|   70|Homo sapiens ribosomal protein protein.     111   5e-24
BC000603-1|AAH00603.1|   70|Homo sapiens ribosomal protein L38 p...   111   5e-24
AB007185-1|BAA25844.1|   37|Homo sapiens ribosomal protein L38 p...    74   6e-13

>Z26876-1|CAA81488.1|   70|Homo sapiens ribosomal protein protein.
          Length = 70

 Score =  111 bits (266), Expect = 5e-24
 Identities = 54/62 (87%), Positives = 57/62 (91%)
 Frame = +3

Query: 132 KTF*LKARRKDAKSVKIKKNPENVKFKVRCSRFLYTLVITDKEKAEKLKQSLPPGLQVKE 311
           K F L ARRKDAKSVKIKKN +NVKFKVRCSR+LYTLVITDKEKAEKLKQSLPPGL VKE
Sbjct: 9   KDFLLTARRKDAKSVKIKKNKDNVKFKVRCSRYLYTLVITDKEKAEKLKQSLPPGLAVKE 68

Query: 312 VK 317
           +K
Sbjct: 69  LK 70


>BC000603-1|AAH00603.1|   70|Homo sapiens ribosomal protein L38
           protein.
          Length = 70

 Score =  111 bits (266), Expect = 5e-24
 Identities = 54/62 (87%), Positives = 57/62 (91%)
 Frame = +3

Query: 132 KTF*LKARRKDAKSVKIKKNPENVKFKVRCSRFLYTLVITDKEKAEKLKQSLPPGLQVKE 311
           K F L ARRKDAKSVKIKKN +NVKFKVRCSR+LYTLVITDKEKAEKLKQSLPPGL VKE
Sbjct: 9   KDFLLTARRKDAKSVKIKKNKDNVKFKVRCSRYLYTLVITDKEKAEKLKQSLPPGLAVKE 68

Query: 312 VK 317
           +K
Sbjct: 69  LK 70


>AB007185-1|BAA25844.1|   37|Homo sapiens ribosomal protein L38
           protein.
          Length = 37

 Score = 74.1 bits (174), Expect = 6e-13
 Identities = 34/37 (91%), Positives = 36/37 (97%)
 Frame = +3

Query: 207 FKVRCSRFLYTLVITDKEKAEKLKQSLPPGLQVKEVK 317
           FKVRCSR+LYTLVITDKEKAEKLKQSLPPGL VKE+K
Sbjct: 1   FKVRCSRYLYTLVITDKEKAEKLKQSLPPGLAVKELK 37


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 48,851,900
Number of Sequences: 237096
Number of extensions: 789266
Number of successful extensions: 1623
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1574
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1623
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 12158972418
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)