Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_E10
         (930 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81463-5|CAB03853.1|   70|Caenorhabditis elegans Hypothetical pr...   104   1e-22
U58742-5|AAB36859.3|  711|Caenorhabditis elegans Hypothetical pr...    29   3.6  
AL033514-26|CAA22110.1| 1144|Caenorhabditis elegans Hypothetical...    29   4.7  

>Z81463-5|CAB03853.1|   70|Caenorhabditis elegans Hypothetical
           protein C06B8.8 protein.
          Length = 70

 Score =  104 bits (249), Expect = 1e-22
 Identities = 48/62 (77%), Positives = 55/62 (88%)
 Frame = +3

Query: 132 KTF*LKARRKDAKSVKIKKNPENVKFKVRCSRFLYTLVITDKEKAEKLKQSLPPGLQVKE 311
           K F +KARRKDAKSVKIKKN  N KFKVRC+ +LYTLV+ DK+KAEKLKQSLPPG+QVKE
Sbjct: 9   KDFLVKARRKDAKSVKIKKNSNNTKFKVRCASYLYTLVVADKDKAEKLKQSLPPGIQVKE 68

Query: 312 VK 317
           +K
Sbjct: 69  LK 70


>U58742-5|AAB36859.3|  711|Caenorhabditis elegans Hypothetical
           protein F31A3.5 protein.
          Length = 711

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 15/39 (38%), Positives = 23/39 (58%)
 Frame = +1

Query: 157 GKTPNRSK*RRTLRMSSSRFDAQGSCTPWSSLTKRRLRN 273
           G+  NR++   T+  S+S+  A  S  P+SS+T  R RN
Sbjct: 194 GRPQNRTRPDETVYQSASQIYAPNSEDPYSSITSERGRN 232


>AL033514-26|CAA22110.1| 1144|Caenorhabditis elegans Hypothetical
           protein Y75B8A.26 protein.
          Length = 1144

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
 Frame = +3

Query: 84  VENYSSSTCRVKSKISKT---F*LKARRKDAKSVKIKKNPENVKFKVRCSRFLYTLVI 248
           +EN  +      S+I +T   F  K+R+ + K  K++KN ENV+   R  + +Y L I
Sbjct: 503 LENGDNGAIEKSSQIDRTNSHFSEKSRKSEEKPQKVEKNVENVQLG-RVKKSVYQLYI 559


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,643,049
Number of Sequences: 27780
Number of extensions: 127152
Number of successful extensions: 365
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 362
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 365
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2391724104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)