Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_E10
         (930 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g59540.1 68416.m06645 60S ribosomal protein L38 (RPL38B) 60S ...    91   1e-18
At2g43460.1 68415.m05401 60S ribosomal protein L38 (RPL38A)            91   1e-18
At1g06920.1 68414.m00735 ovate family protein 58% similar to ova...    30   2.5  
At5g41900.1 68418.m05101 hydrolase, alpha/beta fold family prote...    29   3.3  
At1g64670.1 68414.m07331 hydrolase, alpha/beta fold family prote...    29   3.3  

>At3g59540.1 68416.m06645 60S ribosomal protein L38 (RPL38B) 60S
           RIBOSOMAL PROTEIN L38 - Lycopersicon esculentum,
           EMBL:X69979
          Length = 69

 Score = 90.6 bits (215), Expect = 1e-18
 Identities = 42/61 (68%), Positives = 53/61 (86%)
 Frame = +3

Query: 132 KTF*LKARRKDAKSVKIKKNPENVKFKVRCSRFLYTLVITDKEKAEKLKQSLPPGLQVKE 311
           K F L ARRKDA+SVKIK++ + VKFKVRCSR+LYTL + D+EKA+KLKQSLPPGL V++
Sbjct: 9   KDFLLTARRKDARSVKIKRSKDIVKFKVRCSRYLYTLCVFDQEKADKLKQSLPPGLSVQD 68

Query: 312 V 314
           +
Sbjct: 69  L 69


>At2g43460.1 68415.m05401 60S ribosomal protein L38 (RPL38A) 
          Length = 69

 Score = 90.6 bits (215), Expect = 1e-18
 Identities = 42/61 (68%), Positives = 53/61 (86%)
 Frame = +3

Query: 132 KTF*LKARRKDAKSVKIKKNPENVKFKVRCSRFLYTLVITDKEKAEKLKQSLPPGLQVKE 311
           K F L ARRKDA+SVKIK++ + VKFKVRCSR+LYTL + D+EKA+KLKQSLPPGL V++
Sbjct: 9   KDFLLTARRKDARSVKIKRSKDIVKFKVRCSRYLYTLCVFDQEKADKLKQSLPPGLSVQD 68

Query: 312 V 314
           +
Sbjct: 69  L 69


>At1g06920.1 68414.m00735 ovate family protein 58% similar to ovate
           protein (GI:23429649) [Lycopersicon esculentum];
           contains TIGRFAM TIGR01568 : uncharacterized
           plant-specific domain TIGR01568
          Length = 315

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 15/43 (34%), Positives = 20/43 (46%)
 Frame = +3

Query: 87  ENYSSSTCRVKSKISKTF*LKARRKDAKSVKIKKNPENVKFKV 215
           E+     CR K K  KT     RR  AKS +IK    + + +V
Sbjct: 185 EDEEEDACRTKKKHQKTLVSSGRRSSAKSPRIKLRARSPRIQV 227


>At5g41900.1 68418.m05101 hydrolase, alpha/beta fold family protein
           low similarity to
           2-hydroxy-6-oxo-7-methylocta-2,4-dienoate hydrolase
           [Pseudomonas putida] GI:2822275; contains Pfam profile
           PF00561: hydrolase, alpha/beta fold family
          Length = 471

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 15/32 (46%), Positives = 17/32 (53%)
 Frame = -3

Query: 217 RTLNLTFSGFFFILTDLASFLLALS*KVFDIF 122
           R LN T   F F L D+A FLL  + K  D F
Sbjct: 5   RWLNRTVGFFVFALLDIADFLLCYTYKTLDYF 36


>At1g64670.1 68414.m07331 hydrolase, alpha/beta fold family protein
           low similarity to
           2-hydroxy-6-oxo-7-methylocta-2,4-dienoate hydrolase
           [Pseudomonas putida] GI:2822275; contains Pfam profile
           PF00561: hydrolase, alpha/beta fold family
          Length = 469

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -3

Query: 217 RTLNLTFSGFFFILTDLASFLLALS*KVFDIF 122
           R+LN T   F F + D+  FLL  + K  D F
Sbjct: 5   RSLNRTVGVFVFFILDIVDFLLCFTYKTLDFF 36


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,242,584
Number of Sequences: 28952
Number of extensions: 123475
Number of successful extensions: 278
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 274
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 278
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2217402144
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)