Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP01_F_E09
(1000 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g24220.1 68414.m03054 paired amphipathic helix repeat-contain... 31 0.91
At3g50230.1 68416.m05493 leucine-rich repeat transmembrane prote... 29 3.7
At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profi... 29 4.8
At1g68170.1 68414.m07787 nodulin MtN21 family protein similar to... 29 4.8
At5g45050.2 68418.m05524 disease resistance protein-related simi... 29 6.4
At5g45050.1 68418.m05523 disease resistance protein-related simi... 29 6.4
At5g07390.1 68418.m00846 respiratory burst oxidase protein A (Rb... 29 6.4
At4g25500.2 68417.m03674 arginine/serine-rich splicing factor RS... 29 6.4
At4g25500.1 68417.m03673 arginine/serine-rich splicing factor RS... 29 6.4
At3g55480.2 68416.m06162 adaptin family protein similar to AP-3 ... 29 6.4
At3g55480.1 68416.m06161 adaptin family protein similar to AP-3 ... 29 6.4
At3g20830.1 68416.m02634 protein kinase family protein contains ... 28 8.4
>At1g24220.1 68414.m03054 paired amphipathic helix repeat-containing
protein weak similarity to transcription co-repressor
Sin3 [Xenopus laevis] GI:4960210; contains Pfam profile
PF02671: Paired amphipathic helix repeat
Length = 744
Score = 31.5 bits (68), Expect = 0.91
Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 2/74 (2%)
Frame = -3
Query: 467 SCVIPLILWITVLPPLSELIPLAAAERPXXXXXXXXXXXXXQYANRLSPRVGRFI--NAE 294
S IP+ L IT++PP + + A++P + N+L P+ R I AE
Sbjct: 260 SRTIPVKLKITIIPPKARRTIPSEADKP-------THTDELNFMNKLPPKRRRTIPSEAE 312
Query: 293 KTSHTSXLNLKHKM 252
K +HT LN +K+
Sbjct: 313 KPTHTDELNFMNKL 326
>At3g50230.1 68416.m05493 leucine-rich repeat transmembrane protein
kinase, putative receptor-like protein kinase (RKL1),
Arabidopsis thaliana, EMBL:AF084034
Length = 660
Score = 29.5 bits (63), Expect = 3.7
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = +3
Query: 645 LVRSPVPTLPLTGYLSAFLPSGSVAL 722
L+R +LP T Y +FLPS +VAL
Sbjct: 15 LLRISTASLPATNYFDSFLPSDAVAL 40
>At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profile:
PF00076 RNA recognition motif
Length = 636
Score = 29.1 bits (62), Expect = 4.8
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = -3
Query: 731 AMRKRHASRREKGGQVSGKRQGRNRRAHEGASRGK 627
A R RH+ R +GG+ S R R R + GA RG+
Sbjct: 575 APRGRHSDRAPRGGRFS-DRAPRGRHSDRGAPRGR 608
>At1g68170.1 68414.m07787 nodulin MtN21 family protein similar to
MtN21 GI:2598575 (root nodule development) from
[Medicago truncatula]
Length = 356
Score = 29.1 bits (62), Expect = 4.8
Identities = 20/46 (43%), Positives = 25/46 (54%)
Frame = -3
Query: 533 KRQQRGLFTVPGLLLAFCSHVLSCVIPLILWITVLPPLSELIPLAA 396
+R++R FT +LLA S +L VIP IL IT L S AA
Sbjct: 54 QRKKRPEFTCRLMLLALLSGLLGVVIPSILTITGLALTSATFTSAA 99
>At5g45050.2 68418.m05524 disease resistance protein-related similar
to NL27 [Solanum tuberosum] GI:3947735; contains Pfam
profiles PF03106: WRKY DNA -binding domain, PF00931:
NB-ARC domain, PF00560: Leucine Rich Repeat
Length = 1344
Score = 28.7 bits (61), Expect = 6.4
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = +3
Query: 354 PLPRSLTRCARSFGCGERYQLTQRR 428
P PRS RCA S GC R Q+ + R
Sbjct: 1169 PYPRSYYRCASSKGCFARKQVERSR 1193
>At5g45050.1 68418.m05523 disease resistance protein-related similar
to NL27 [Solanum tuberosum] GI:3947735; contains Pfam
profiles PF03106: WRKY DNA -binding domain, PF00931:
NB-ARC domain, PF00560: Leucine Rich Repeat
Length = 1372
Score = 28.7 bits (61), Expect = 6.4
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = +3
Query: 354 PLPRSLTRCARSFGCGERYQLTQRR 428
P PRS RCA S GC R Q+ + R
Sbjct: 1197 PYPRSYYRCASSKGCFARKQVERSR 1221
>At5g07390.1 68418.m00846 respiratory burst oxidase protein A
(RbohA) / NADPH oxidase identical to respiratory burst
oxidase protein A from Arabidopsis thaliana [gi:3242781]
Length = 902
Score = 28.7 bits (61), Expect = 6.4
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = +3
Query: 546 RPPDEHHKNRRXSQRW 593
RPPDEH NR S+ W
Sbjct: 667 RPPDEHRLNRADSKHW 682
>At4g25500.2 68417.m03674 arginine/serine-rich splicing factor RSP40
(RSP40) identical to SP|P92965 Arginine/serine-rich
splicing factor RSP40 {Arabidopsis thaliana}
Length = 309
Score = 28.7 bits (61), Expect = 6.4
Identities = 14/54 (25%), Positives = 26/54 (48%)
Frame = -3
Query: 776 GCXPLTSYRXDTTA*AMRKRHASRREKGGQVSGKRQGRNRRAHEGASRGKRLVS 615
G P+ +YR + T+ +R + K + GR+RR ++ R +R+ S
Sbjct: 168 GASPVAAYRKERTSPDYGRRRSPSPYKKSRRGSPEYGRDRRGNDSPRRRERVAS 221
>At4g25500.1 68417.m03673 arginine/serine-rich splicing factor RSP40
(RSP40) identical to SP|P92965 Arginine/serine-rich
splicing factor RSP40 {Arabidopsis thaliana}
Length = 350
Score = 28.7 bits (61), Expect = 6.4
Identities = 14/54 (25%), Positives = 26/54 (48%)
Frame = -3
Query: 776 GCXPLTSYRXDTTA*AMRKRHASRREKGGQVSGKRQGRNRRAHEGASRGKRLVS 615
G P+ +YR + T+ +R + K + GR+RR ++ R +R+ S
Sbjct: 209 GASPVAAYRKERTSPDYGRRRSPSPYKKSRRGSPEYGRDRRGNDSPRRRERVAS 262
>At3g55480.2 68416.m06162 adaptin family protein similar to AP-3
complex beta3A subunit, Homo sapiens, SP|O00203; contains
Pfam profile: PF01602 Adaptin N terminal region
Length = 987
Score = 28.7 bits (61), Expect = 6.4
Identities = 15/33 (45%), Positives = 21/33 (63%)
Frame = -3
Query: 500 GLLLAFCSHVLSCVIPLILWITVLPPLSELIPL 402
GL L F S +LS IPL++ ITV +E++ L
Sbjct: 924 GLRLRFSSKILSSEIPLLITITVEGKCTEVLNL 956
>At3g55480.1 68416.m06161 adaptin family protein similar to AP-3
complex beta3A subunit, Homo sapiens, SP|O00203; contains
Pfam profile: PF01602 Adaptin N terminal region
Length = 987
Score = 28.7 bits (61), Expect = 6.4
Identities = 15/33 (45%), Positives = 21/33 (63%)
Frame = -3
Query: 500 GLLLAFCSHVLSCVIPLILWITVLPPLSELIPL 402
GL L F S +LS IPL++ ITV +E++ L
Sbjct: 924 GLRLRFSSKILSSEIPLLITITVEGKCTEVLNL 956
>At3g20830.1 68416.m02634 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 408
Score = 28.3 bits (60), Expect = 8.4
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = -2
Query: 345 PIRKPPLPARWPIH*CRKNLPHL 277
P PP P R P H CRKN P +
Sbjct: 384 PSSAPPSPLRSPPHVCRKNDPFI 406
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,108,281
Number of Sequences: 28952
Number of extensions: 327842
Number of successful extensions: 842
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 812
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 841
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2441087448
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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