Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_E08
         (881 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC15E1.08 |||NatA N-acetyltransferase complex subunit Ard1 |Sc...   202   4e-53
SPCC16C4.12 |||NatB N-acetyltransferase complex catalytic subuni...    69   9e-13
SPBC15D4.06 |||NatC N-acetyltransferase complex catalytic subuni...    63   6e-11
SPAC17D4.02 |cdc45|sna41, goa1|DNA replication pre-initiation co...    29   0.88 
SPBC800.03 |clr3||histone deacetylase |Schizosaccharomyces pombe...    27   4.7  
SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces po...    26   8.2  

>SPAC15E1.08 |||NatA N-acetyltransferase complex subunit Ard1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 177

 Score =  202 bits (494), Expect = 4e-53
 Identities = 97/146 (66%), Positives = 117/146 (80%), Gaps = 1/146 (0%)
 Frame = +1

Query: 283 MNIRCARPSDLMNMQHCNLLCLPENYQMKYYFYHGLSWPQLSYVAEDEKGHIVGYVLAKM 462
           M+IR AR SDL  MQ+CNL  LPENYQ+KYY YH +SWP LSYVA D KG +VGYVLAKM
Sbjct: 1   MDIRPARISDLTGMQNCNLHNLPENYQLKYYLYHAISWPMLSYVATDPKGRVVGYVLAKM 60

Query: 463 EEDGEDN-RHGHITSLAVKRSHRRLGLAQKLMNQASLAMVECFQAKYVSLHVRKSNRAAL 639
           EE+ +D   HGHITS++V RS+R LGLA++LM Q+  AMVE + AKY+SLHVRKSNRAA+
Sbjct: 61  EEEPKDGIPHGHITSVSVMRSYRHLGLAKRLMVQSQRAMVEVYGAKYMSLHVRKSNRAAI 120

Query: 640 NLYTNSLGFKILEIEPKYYADGEDAY 717
           +LY ++L F +  IE KYYADGEDAY
Sbjct: 121 HLYRDTLQFDVQGIESKYYADGEDAY 146


>SPCC16C4.12 |||NatB N-acetyltransferase complex catalytic subunit
           Nat3 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 180

 Score = 68.9 bits (161), Expect = 9e-13
 Identities = 41/136 (30%), Positives = 71/136 (52%), Gaps = 2/136 (1%)
 Frame = +1

Query: 301 RPSDLMNMQHCNLLCLPENYQMKYYFYHGLSWPQLSYVAEDEKGH--IVGYVLAKMEEDG 474
           + +DL +  + NL  L E + + +Y  +   WP L  V E +     ++GY++ K E  G
Sbjct: 8   KATDLFSFNNINLDPLTETFNISFYLSYLNKWPSLCVVQESDLSDPTLMGYIMGKSEGTG 67

Query: 475 EDNRHGHITSLAVKRSHRRLGLAQKLMNQASLAMVECFQAKYVSLHVRKSNRAALNLYTN 654
           ++  H H+T++ V  + RRLGLA+ +M+     +     A +V L VR SN  A++ Y  
Sbjct: 68  KE-WHTHVTAITVAPNSRRLGLARTMMDYLE-TVGNSENAFFVDLFVRASNALAIDFY-K 124

Query: 655 SLGFKILEIEPKYYAD 702
            LG+ +      YY++
Sbjct: 125 GLGYSVYRRVIGYYSN 140


>SPBC15D4.06 |||NatC N-acetyltransferase complex catalytic subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 150

 Score = 62.9 bits (146), Expect = 6e-11
 Identities = 41/124 (33%), Positives = 62/124 (50%)
 Frame = +1

Query: 346 LPENYQMKYYFYHGLSWPQLSYVAEDEKGHIVGYVLAKMEEDGEDNRHGHITSLAVKRSH 525
           L E Y    Y Y    WP+ S+VA D     +G V+ K +        G+I  LA+ + +
Sbjct: 23  LSEPYSKYVYRYFVHQWPEFSFVALDND-RFIGAVICKQDVHRGTTLRGYIAMLAIVKEY 81

Query: 526 RRLGLAQKLMNQASLAMVECFQAKYVSLHVRKSNRAALNLYTNSLGFKILEIEPKYYADG 705
           R  G+A KL  QASL +++   A+ + L     N AA++ Y   LGF   +   +YY +G
Sbjct: 82  RGQGIATKL-TQASLDVMKNRGAQEIVLETEVDNEAAMSFY-ERLGFCRYKRLYRYYLNG 139

Query: 706 EDAY 717
            DA+
Sbjct: 140 TDAF 143


>SPAC17D4.02 |cdc45|sna41, goa1|DNA replication pre-initiation
           complex subunit Cdc45|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 638

 Score = 29.1 bits (62), Expect = 0.88
 Identities = 26/95 (27%), Positives = 45/95 (47%), Gaps = 5/95 (5%)
 Frame = +1

Query: 406 SYVAEDEKGHIVGY---VLAKMEEDGEDNRHGHITSLAVKRSHRRLGLA-QKLMNQASLA 573
           ++V E  +  IVG         E+D +D+ HG          H R G+A Q++ N  S  
Sbjct: 558 AFVEEKNRYLIVGTSTSAFTSNEDDDDDDGHG----------HNRFGVAFQEVANMTSAT 607

Query: 574 M-VECFQAKYVSLHVRKSNRAALNLYTNSLGFKIL 675
           + ++CF+A  +     +  ++ L ++  SL FK L
Sbjct: 608 LQMDCFEASVI-----ECQKSDLGVFLESLSFKTL 637


>SPBC800.03 |clr3||histone deacetylase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 687

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -2

Query: 400 GAKKVHGRSNISSDSSLADTISC 332
           G K VHG  N++S  +++D + C
Sbjct: 577 GGKAVHGLVNLASSRNVSDRVKC 599


>SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 517

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 9/22 (40%), Positives = 17/22 (77%)
 Frame = -3

Query: 495 VTMTIILTVLFHFCQNISNNMS 430
           +  +I+LT+LF+F  N+S+ M+
Sbjct: 278 IPFSIVLTILFYFDHNVSSVMA 299


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,073,281
Number of Sequences: 5004
Number of extensions: 58465
Number of successful extensions: 146
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)