Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP01_F_E08
(881 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1283 - 32373774-32373821,32373834-32373958,32375717-32376227 213 2e-55
03_05_0805 - 27839576-27839667,27839763-27839823,27840082-278401... 83 3e-16
11_05_0016 - 18410889-18411104,18411326-18411381,18412883-184130... 63 3e-10
01_05_0667 + 24142121-24142319,24142742-24142864,24144522-24144739 46 4e-05
03_02_0081 - 5506194-5506197,5506310-5507170,5507299-5507456,550... 42 5e-04
06_03_0946 - 26208253-26209075,26209181-26209329,26209525-26209812 37 0.019
04_04_0166 - 23250473-23250746,23251349-23252025 33 0.23
02_01_0602 + 4481869-4482111,4482315-4482472,4482603-4483467 31 0.93
12_02_0774 - 23035853-23035900,23036027-23036875,23037732-23037905 29 4.9
11_02_0063 + 7916048-7917135,7917225-7918690,7920177-7920238,792... 29 4.9
>04_04_1283 - 32373774-32373821,32373834-32373958,32375717-32376227
Length = 227
Score = 213 bits (520), Expect = 2e-55
Identities = 101/143 (70%), Positives = 116/143 (81%)
Frame = +1
Query: 289 IRCARPSDLMNMQHCNLLCLPENYQMKYYFYHGLSWPQLSYVAEDEKGHIVGYVLAKMEE 468
IR A DL+ MQ CNL+CLPENYQMKYY YH LSWPQL +VAED G IVGYVLAKMEE
Sbjct: 4 IRQATIDDLLAMQACNLMCLPENYQMKYYLYHMLSWPQLLFVAEDYGGRIVGYVLAKMEE 63
Query: 469 DGEDNRHGHITSLAVKRSHRRLGLAQKLMNQASLAMVECFQAKYVSLHVRKSNRAALNLY 648
D + HGHITSLAV RSHR+LGLA KLM+ A AM + F A+YVSLHVR+SNRAA NLY
Sbjct: 64 DPSEPCHGHITSLAVLRSHRKLGLATKLMSAAQAAMDQVFGAEYVSLHVRRSNRAAFNLY 123
Query: 649 TNSLGFKILEIEPKYYADGEDAY 717
T++LG++I ++E KYYADGEDAY
Sbjct: 124 TSTLGYQIHDVEAKYYADGEDAY 146
>03_05_0805 -
27839576-27839667,27839763-27839823,27840082-27840151,
27841167-27841299,27841928-27842018,27842097-27842174
Length = 174
Score = 83.0 bits (196), Expect = 3e-16
Identities = 45/134 (33%), Positives = 70/134 (52%)
Frame = +1
Query: 310 DLMNMQHCNLLCLPENYQMKYYFYHGLSWPQLSYVAEDEKGHIVGYVLAKMEEDGEDNRH 489
DL+ NL L E + M +Y + WP + A ++GY++ K+E GE + H
Sbjct: 11 DLLRFSSVNLDHLTETFNMSFYMTYMARWPDYFHAAVSPGDRVMGYIMGKVEGQGE-SWH 69
Query: 490 GHITSLAVKRSHRRLGLAQKLMNQASLAMVECFQAKYVSLHVRKSNRAALNLYTNSLGFK 669
GH+T+++V RR LA+KLMN + +A +V L VR SN A+ +Y LG+
Sbjct: 70 GHVTAVSVATEFRRQKLAKKLMNLLEEISDKMDKAYFVDLFVRASNMPAIRMY-EKLGYV 128
Query: 670 ILEIEPKYYADGED 711
+ +YY+ ED
Sbjct: 129 VYRRVLRYYSGEED 142
>11_05_0016 -
18410889-18411104,18411326-18411381,18412883-18413009,
18413113-18413307
Length = 197
Score = 62.9 bits (146), Expect = 3e-10
Identities = 45/125 (36%), Positives = 67/125 (53%), Gaps = 1/125 (0%)
Frame = +1
Query: 346 LPENYQMKYYFYHGLSWPQLSYVAEDEK-GHIVGYVLAKMEEDGEDNRHGHITSLAVKRS 522
L E Y + Y Y WPQL+++A D K G VG V+ KM E R G+I L V +
Sbjct: 43 LSEPYSIFTYRYFVYLWPQLTFLAFDPKDGKCVGTVVCKMGEHRGAFR-GYIAMLVVLKP 101
Query: 523 HRRLGLAQKLMNQASLAMVECFQAKYVSLHVRKSNRAALNLYTNSLGFKILEIEPKYYAD 702
+R G+A +L+ ++ M+E + V+L +N+ AL LY LGF + +YY +
Sbjct: 102 YRGRGIATELVTRSIRVMMES-GCEEVTLEAEVTNKGALALY-GRLGFIRAKRLYRYYLN 159
Query: 703 GEDAY 717
G DA+
Sbjct: 160 GVDAF 164
>01_05_0667 + 24142121-24142319,24142742-24142864,24144522-24144739
Length = 179
Score = 46.0 bits (104), Expect = 4e-05
Identities = 35/132 (26%), Positives = 61/132 (46%)
Frame = +1
Query: 301 RPSDLMNMQHCNLLCLPENYQMKYYFYHGLSWPQLSYVAEDEKGHIVGYVLAKMEEDGED 480
R ++M ++ N P Y KYY + ++ + S +A VG + ++E+
Sbjct: 30 RDKNVMQLKKLNTALFPVRYNEKYY-HDTIASKEFSKLAY-YSDICVGAIACRLEKKEGG 87
Query: 481 NRHGHITSLAVKRSHRRLGLAQKLMNQASLAMVECFQAKYVSLHVRKSNRAALNLYTNSL 660
+I +L V +R LG+ KL+N + + E + LHV+ +N A+ Y
Sbjct: 88 AVCVYIMTLGVLAPYRSLGIGSKLLNHV-IDLCEKQNIPEIYLHVQTNNDDAIAFY-KKF 145
Query: 661 GFKILEIEPKYY 696
GF+I + KYY
Sbjct: 146 GFEITKTIEKYY 157
>03_02_0081 -
5506194-5506197,5506310-5507170,5507299-5507456,
5507549-5507740
Length = 404
Score = 42.3 bits (95), Expect = 5e-04
Identities = 23/59 (38%), Positives = 34/59 (57%)
Frame = +1
Query: 490 GHITSLAVKRSHRRLGLAQKLMNQASLAMVECFQAKYVSLHVRKSNRAALNLYTNSLGF 666
G+I L V SHRR+GLA +++ + A E A+Y + KSN A+L L+T G+
Sbjct: 105 GYILGLRVAPSHRRMGLALRMVRRME-AWFERMGAEYAYMATDKSNEASLRLFTVRCGY 162
>06_03_0946 - 26208253-26209075,26209181-26209329,26209525-26209812
Length = 419
Score = 37.1 bits (82), Expect = 0.019
Identities = 27/93 (29%), Positives = 46/93 (49%), Gaps = 7/93 (7%)
Frame = +1
Query: 409 YVAEDEKGHIVGYVLA---KMEEDGEDNRH----GHITSLAVKRSHRRLGLAQKLMNQAS 567
Y E+EK +VG + A + G+ + ++ L V SHRRLG+ L+ +A
Sbjct: 100 YGEEEEKKKVVGVIKACVKTVSRGGKQEKPFVKVANLLGLRVSPSHRRLGIGTALVRRAE 159
Query: 568 LAMVECFQAKYVSLHVRKSNRAALNLYTNSLGF 666
V A++ ++ +SN A+L L+T G+
Sbjct: 160 EWCV-ARGAEHATMATTESNAASLALFTGRFGY 191
>04_04_0166 - 23250473-23250746,23251349-23252025
Length = 316
Score = 33.5 bits (73), Expect = 0.23
Identities = 16/64 (25%), Positives = 36/64 (56%)
Frame = +1
Query: 493 HITSLAVKRSHRRLGLAQKLMNQASLAMVECFQAKYVSLHVRKSNRAALNLYTNSLGFKI 672
+I ++ VK S RR G+ ++L+ +++ ++V LH R ++ N+Y + G+ I
Sbjct: 214 YICNMTVKTSLRRRGIGKQLLKACEDLIIKMDAKRHVYLHCRIIDQVPFNMYRKA-GYNI 272
Query: 673 LEIE 684
++ +
Sbjct: 273 VQTD 276
>02_01_0602 + 4481869-4482111,4482315-4482472,4482603-4483467
Length = 421
Score = 31.5 bits (68), Expect = 0.93
Identities = 19/66 (28%), Positives = 33/66 (50%)
Frame = +1
Query: 496 ITSLAVKRSHRRLGLAQKLMNQASLAMVECFQAKYVSLHVRKSNRAALNLYTNSLGFKIL 675
+ L V SHRRLG+A +L+ +A A Y ++ SN A+L L+ + +
Sbjct: 124 LLGLRVSPSHRRLGIATELVRRAE-EWCAARGAAYATMATTASNAASLALFQGRFKYALF 182
Query: 676 EIEPKY 693
+P++
Sbjct: 183 R-KPRF 187
>12_02_0774 - 23035853-23035900,23036027-23036875,23037732-23037905
Length = 356
Score = 29.1 bits (62), Expect = 4.9
Identities = 18/66 (27%), Positives = 29/66 (43%)
Frame = +1
Query: 469 DGEDNRHGHITSLAVKRSHRRLGLAQKLMNQASLAMVECFQAKYVSLHVRKSNRAALNLY 648
DG+ G++ L V HRR G+ KL+ A A++V +N A+ L+
Sbjct: 86 DGDTVLAGYVLGLRVSPVHRRKGIGLKLVESVE-AWAARHGARHVVAAADAANAASRGLF 144
Query: 649 TNSLGF 666
G+
Sbjct: 145 VGRRGY 150
>11_02_0063 + 7916048-7917135,7917225-7918690,7920177-7920238,
7921808-7922407
Length = 1071
Score = 29.1 bits (62), Expect = 4.9
Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Frame = +1
Query: 499 TSLAVKRSHRRLGLAQKLMNQASLAMVECFQAKYVSLH-VRKSNRAALN 642
T + VKRS+ RLG+ ++ N+ S+ M+E S++ + K + LN
Sbjct: 854 TYVQVKRSNGRLGVYKEFSNEVSMLMLEADPQNATSIYNLHKDAKDKLN 902
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,878,925
Number of Sequences: 37544
Number of extensions: 347705
Number of successful extensions: 729
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 694
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 727
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2491484208
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -