Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP01_F_E08
(881 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF047659-11|AAC04428.1| 182|Caenorhabditis elegans Hypothetical... 244 5e-65
AC024878-1|AAK85513.1| 173|Caenorhabditis elegans Hypothetical ... 82 6e-16
AF016450-12|AAB65989.1| 278|Caenorhabditis elegans Hypothetical... 65 7e-11
Z81073-6|CAN86904.2| 215|Caenorhabditis elegans Hypothetical pr... 45 6e-05
Z81073-5|CAE17804.3| 242|Caenorhabditis elegans Hypothetical pr... 45 6e-05
U00067-6|AAL08037.1| 167|Caenorhabditis elegans Hypothetical pr... 41 0.001
U23524-5|AAC46821.2| 252|Caenorhabditis elegans Hypothetical pr... 31 0.83
U52001-1|AAA96093.1| 656|Caenorhabditis elegans Feminization of... 29 4.4
J03172-1|AAA28055.1| 656|Caenorhabditis elegans protein ( C.ele... 29 4.4
Z92812-6|CAB07280.1| 372|Caenorhabditis elegans Hypothetical pr... 28 7.7
Z81070-4|CAB03003.2| 474|Caenorhabditis elegans Hypothetical pr... 28 7.7
U21310-3|AAA62522.2| 1288|Caenorhabditis elegans Hypothetical pr... 28 7.7
>AF047659-11|AAC04428.1| 182|Caenorhabditis elegans Hypothetical
protein K07H8.3 protein.
Length = 182
Score = 244 bits (598), Expect = 5e-65
Identities = 111/145 (76%), Positives = 127/145 (87%)
Frame = +1
Query: 283 MNIRCARPSDLMNMQHCNLLCLPENYQMKYYFYHGLSWPQLSYVAEDEKGHIVGYVLAKM 462
MNIRCAR DLM+MQ+ NL+CLPENYQMKYYFYH LSWPQLSY+AED KG++VGYVLAKM
Sbjct: 1 MNIRCARVDDLMSMQNANLMCLPENYQMKYYFYHALSWPQLSYIAEDHKGNVVGYVLAKM 60
Query: 463 EEDGEDNRHGHITSLAVKRSHRRLGLAQKLMNQASLAMVECFQAKYVSLHVRKSNRAALN 642
EED + HGHITSLAVKRS+RRLGLA K+M+Q + AMVE + AKYVSLHVR SNRAALN
Sbjct: 61 EEDPGEEPHGHITSLAVKRSYRRLGLANKMMDQTARAMVETYNAKYVSLHVRVSNRAALN 120
Query: 643 LYTNSLGFKILEIEPKYYADGEDAY 717
LY N+L F+I++ EPKYYADGEDAY
Sbjct: 121 LYKNTLKFEIVDTEPKYYADGEDAY 145
>AC024878-1|AAK85513.1| 173|Caenorhabditis elegans Hypothetical
protein Y97E10AL.3 protein.
Length = 173
Score = 81.8 bits (193), Expect = 6e-16
Identities = 52/141 (36%), Positives = 77/141 (54%), Gaps = 4/141 (2%)
Frame = +1
Query: 301 RPSDLMNM---QHCNLLCLPENYQMKYYFYHGLSWPQLSYVAEDEKGHIVGYVLAKMEED 471
RP D+M+M + NL E Y ++Y ++ +++P+ VAE G I+ YV+ K+E
Sbjct: 5 RPFDVMDMFKFNNVNLDINTETYGFQFYLHYMMNYPEYYQVAEHPNGEIMAYVMGKIE-- 62
Query: 472 GED-NRHGHITSLAVKRSHRRLGLAQKLMNQASLAMVECFQAKYVSLHVRKSNRAALNLY 648
G D N HGH+T+L+V + RRLGLA +M E +A +V L VR SN+ A+ LY
Sbjct: 63 GRDTNWHGHVTALSVAPNFRRLGLAAYMMEFLERTS-EARRAYFVDLFVRVSNKIAIELY 121
Query: 649 TNSLGFKILEIEPKYYADGED 711
LG+ + YY D
Sbjct: 122 -KKLGYVVYRQIIGYYTGDRD 141
>AF016450-12|AAB65989.1| 278|Caenorhabditis elegans Hypothetical
protein B0238.10 protein.
Length = 278
Score = 64.9 bits (151), Expect = 7e-11
Identities = 44/125 (35%), Positives = 66/125 (52%), Gaps = 1/125 (0%)
Frame = +1
Query: 346 LPENYQMKYYFYHGLSWPQLSYVAEDEKGHI-VGYVLAKMEEDGEDNRHGHITSLAVKRS 522
L E Y + Y Y +WP+ ++A D+ + +G VL K+E D G++ LAV S
Sbjct: 117 LSEPYSIYTYRYFLHNWPEYCFLAYDQTNNTYIGAVLCKLELDMYGRCKGYLAMLAVDES 176
Query: 523 HRRLGLAQKLMNQASLAMVECFQAKYVSLHVRKSNRAALNLYTNSLGFKILEIEPKYYAD 702
RRLG+ +L+ +A AM + + L SN+ A LY+N LGF + KYY +
Sbjct: 177 CRRLGIGTRLVRRALDAM-QSKGCDEIVLETEVSNKNAQRLYSN-LGFIRQKRLLKYYLN 234
Query: 703 GEDAY 717
G DA+
Sbjct: 235 GGDAF 239
>Z81073-6|CAN86904.2| 215|Caenorhabditis elegans Hypothetical
protein F30F8.10b protein.
Length = 215
Score = 45.2 bits (102), Expect = 6e-05
Identities = 31/84 (36%), Positives = 44/84 (52%), Gaps = 2/84 (2%)
Frame = +1
Query: 481 NRH-GHITSLAVKRSHRRLGLAQKLMNQASLAMVE-CFQAKYVSLHVRKSNRAALNLYTN 654
N H +I S+AV + RRLGLA +L+N ++ + + V LHV +N AAL+ Y
Sbjct: 94 NAHVAYILSIAVDKKFRRLGLATRLLNNLMSSLSDHPPYPRAVFLHVLSTNSAALSFY-K 152
Query: 655 SLGFKILEIEPKYYADGEDAYP*C 726
GF+ P+YY GE C
Sbjct: 153 MHGFEFHASLPEYYRIGEQLADGC 176
>Z81073-5|CAE17804.3| 242|Caenorhabditis elegans Hypothetical
protein F30F8.10a protein.
Length = 242
Score = 45.2 bits (102), Expect = 6e-05
Identities = 31/84 (36%), Positives = 44/84 (52%), Gaps = 2/84 (2%)
Frame = +1
Query: 481 NRH-GHITSLAVKRSHRRLGLAQKLMNQASLAMVE-CFQAKYVSLHVRKSNRAALNLYTN 654
N H +I S+AV + RRLGLA +L+N ++ + + V LHV +N AAL+ Y
Sbjct: 121 NAHVAYILSIAVDKKFRRLGLATRLLNNLMSSLSDHPPYPRAVFLHVLSTNSAALSFY-K 179
Query: 655 SLGFKILEIEPKYYADGEDAYP*C 726
GF+ P+YY GE C
Sbjct: 180 MHGFEFHASLPEYYRIGEQLADGC 203
>U00067-6|AAL08037.1| 167|Caenorhabditis elegans Hypothetical
protein F54E7.9 protein.
Length = 167
Score = 40.7 bits (91), Expect = 0.001
Identities = 26/83 (31%), Positives = 40/83 (48%)
Frame = +1
Query: 448 VLAKMEEDGEDNRHGHITSLAVKRSHRRLGLAQKLMNQASLAMVECFQAKYVSLHVRKSN 627
++A E+ E R +I S V HR GL LM+ + + + LHV+ SN
Sbjct: 71 IVAVKPENFETGRVLYIRSFGVHPRHREAGLGSFLMDFVD-EKGKLLKLPHAMLHVQTSN 129
Query: 628 RAALNLYTNSLGFKILEIEPKYY 696
+ A+ Y N GF + + P+YY
Sbjct: 130 KTAIEFYKNR-GFNVDCLVPQYY 151
>U23524-5|AAC46821.2| 252|Caenorhabditis elegans Hypothetical
protein C29F5.2 protein.
Length = 252
Score = 31.5 bits (68), Expect = 0.83
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +1
Query: 313 LMNMQHCNLLCLPENYQMKYYFYHGLS 393
++++QHC L C NY +Y + GLS
Sbjct: 119 IVDLQHCTLPCKSINYNFHFYSFKGLS 145
>U52001-1|AAA96093.1| 656|Caenorhabditis elegans Feminization of xx
and xo animalsprotein 1, isoform a protein.
Length = 656
Score = 29.1 bits (62), Expect = 4.4
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Frame = +1
Query: 430 GH--IVGYVLAKMEEDGEDNRHGHITSLAVKRSHRRLGLAQKLM 555
GH IV Y+L K + NRHGH T L + ++G+ ++L+
Sbjct: 134 GHLDIVKYLLEKGADPHIPNRHGH-TCLMIASYRNKVGIVEELL 176
>J03172-1|AAA28055.1| 656|Caenorhabditis elegans protein (
C.elegans fem-1 gene,complete cds. ).
Length = 656
Score = 29.1 bits (62), Expect = 4.4
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Frame = +1
Query: 430 GH--IVGYVLAKMEEDGEDNRHGHITSLAVKRSHRRLGLAQKLM 555
GH IV Y+L K + NRHGH T L + ++G+ ++L+
Sbjct: 134 GHLDIVKYLLEKGADPHIPNRHGH-TCLMIASYRNKVGIVEELL 176
>Z92812-6|CAB07280.1| 372|Caenorhabditis elegans Hypothetical
protein T03E6.6 protein.
Length = 372
Score = 28.3 bits (60), Expect = 7.7
Identities = 15/28 (53%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Frame = -2
Query: 196 VLEQIEIWINSTSKQC-TNFKI*LIGEV 116
+L+Q E W NST +C T F I LI EV
Sbjct: 109 ILQQNECWQNSTYLKCLTTFTINLIAEV 136
>Z81070-4|CAB03003.2| 474|Caenorhabditis elegans Hypothetical
protein F26E4.5 protein.
Length = 474
Score = 28.3 bits (60), Expect = 7.7
Identities = 12/41 (29%), Positives = 21/41 (51%)
Frame = -1
Query: 245 GCLTSDAGGVSDIPPSSSRTNRNLDKQHFQTMYQLQNLINW 123
G TS + V + P+ ++N +L K H +L+ + NW
Sbjct: 38 GASTSLSKSVEESAPNKDKSNSSLVKSHHVLKIKLKKITNW 78
>U21310-3|AAA62522.2| 1288|Caenorhabditis elegans Hypothetical
protein F40H6.5 protein.
Length = 1288
Score = 28.3 bits (60), Expect = 7.7
Identities = 17/59 (28%), Positives = 31/59 (52%)
Frame = +1
Query: 334 NLLCLPENYQMKYYFYHGLSWPQLSYVAEDEKGHIVGYVLAKMEEDGEDNRHGHITSLA 510
NL+ + E Y+ +YY G + L + G+IVGY + ++ ++ +GH+ S A
Sbjct: 432 NLVPIRELYKDRYYVVAGNDYQYLIDDGYNITGNIVGYTV-DCKDSKDEFVYGHLPSYA 489
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,958,041
Number of Sequences: 27780
Number of extensions: 329570
Number of successful extensions: 777
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 754
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 773
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2223883816
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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