Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_E07
         (878 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE...    50   8e-05
UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1; ...    50   1e-04
UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4; Ma...    48   3e-04
UniRef50_P03087 Cluster: Capsid protein VP1; n=1927; Polyomaviru...    42   0.016
UniRef50_P03023 Cluster: Lactose operon repressor; n=24; Enterob...    40   0.083
UniRef50_A6DNS7 Cluster: Probable ECF sigma factor; n=1; Lentisp...    34   5.5  
UniRef50_Q9VRU9 Cluster: CG12330-PA; n=4; Diptera|Rep: CG12330-P...    33   7.2  

>UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE -
           Myxococcus xanthus
          Length = 486

 Score = 50.0 bits (114), Expect = 8e-05
 Identities = 24/35 (68%), Positives = 25/35 (71%)
 Frame = +3

Query: 468 CINESANARGEAVCVLGALPLPRSLTRCARSFGCG 572
           CI + A AR EAV VL ALPL RS TRC RS GCG
Sbjct: 266 CIRDPATARSEAVWVLVALPLLRSRTRCVRSVGCG 300


>UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1;
           Escherichia coli|Rep: Putative uncharacterized protein -
           Escherichia coli
          Length = 147

 Score = 49.6 bits (113), Expect = 1e-04
 Identities = 22/33 (66%), Positives = 24/33 (72%)
 Frame = +3

Query: 492 RGEAVCVLGALPLPRSLTRCARSFGCGXRYXLT 590
           R   +C  G +PLPRSLTR ARSFGCG RY LT
Sbjct: 26  RVSRICDTGDIPLPRSLTRYARSFGCGERYRLT 58


>UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4;
           Magnoliophyta|Rep: Putative reverse transcriptase -
           Zingiber officinale (Ginger)
          Length = 49

 Score = 48.0 bits (109), Expect = 3e-04
 Identities = 20/22 (90%), Positives = 21/22 (95%)
 Frame = +1

Query: 466 SALMNRPTRGERRFAYWAPFRF 531
           +ALMNRPTRGERRFAYWA FRF
Sbjct: 25  AALMNRPTRGERRFAYWALFRF 46


>UniRef50_P03087 Cluster: Capsid protein VP1; n=1927;
           Polyomavirus|Rep: Capsid protein VP1 - Simian virus 40
           (SV40)
          Length = 364

 Score = 42.3 bits (95), Expect = 0.016
 Identities = 18/19 (94%), Positives = 18/19 (94%)
 Frame = +1

Query: 271 DPDMIRYIDEXGQTTTRMQ 327
           DPDMIRYIDE GQTTTRMQ
Sbjct: 346 DPDMIRYIDEFGQTTTRMQ 364


>UniRef50_P03023 Cluster: Lactose operon repressor; n=24;
           Enterobacteriaceae|Rep: Lactose operon repressor -
           Escherichia coli (strain K12)
          Length = 360

 Score = 39.9 bits (89), Expect = 0.083
 Identities = 19/24 (79%), Positives = 21/24 (87%)
 Frame = -2

Query: 538 ERGSGRAPNTQTASPRALADSLMQ 467
           +R +  APNTQTASPRALADSLMQ
Sbjct: 325 KRKTTLAPNTQTASPRALADSLMQ 348


>UniRef50_A6DNS7 Cluster: Probable ECF sigma factor; n=1;
           Lentisphaera araneosa HTCC2155|Rep: Probable ECF sigma
           factor - Lentisphaera araneosa HTCC2155
          Length = 201

 Score = 33.9 bits (74), Expect = 5.5
 Identities = 17/56 (30%), Positives = 28/56 (50%)
 Frame = +1

Query: 349 EICDAXALFVTIISCNKQVNNNNCIHFMFQVQGEVWEVFSALMNRPTRGERRFAYW 516
           +  DA   F+ I   N  +N+++C   + +V  +VWE  +     P RG  +F YW
Sbjct: 32  DFSDAYRRFIYIALRNNGLNHHDCEEVVQRVMIKVWEKIARFKYNPGRG--KFRYW 85


>UniRef50_Q9VRU9 Cluster: CG12330-PA; n=4; Diptera|Rep: CG12330-PA -
           Drosophila melanogaster (Fruit fly)
          Length = 239

 Score = 33.5 bits (73), Expect = 7.2
 Identities = 17/45 (37%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
 Frame = +2

Query: 710 PXAXXPPXXPXXKFXPPIXXVGKPPXG-FKKNXXXPPKNPXXXPP 841
           P    PP  P   + PP    GKPP    K +   PPKN    PP
Sbjct: 41  PPPRPPPPAPANSYGPPKKGNGKPPPAPPKPSYGPPPKNGNGKPP 85


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 593,725,163
Number of Sequences: 1657284
Number of extensions: 9484459
Number of successful extensions: 26942
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 20213
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24663
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 78702453312
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)