Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP01_F_E07
(878 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X67337-1|CAA47752.1| 551|Homo sapiens Human pre-mRNA cleavage f... 32 3.2
X67336-1|CAA47751.1| 551|Homo sapiens HPBRII-7 protein. 32 3.2
BC000714-1|AAH00714.1| 588|Homo sapiens CPSF6 protein protein. 32 3.2
AK223568-1|BAD97288.1| 551|Homo sapiens cleavage and polyadenyl... 32 3.2
BC040943-1|AAH40943.1| 498|Homo sapiens WAS protein family, mem... 31 5.5
BC019928-1|AAH19928.1| 201|Homo sapiens LPHN1 protein protein. 31 5.5
AL096774-6|CAC18518.1| 498|Homo sapiens WAS protein family, mem... 31 5.5
AK022001-1|BAB13950.1| 201|Homo sapiens protein ( Homo sapiens ... 31 5.5
AB026542-1|BAA81795.1| 498|Homo sapiens WASP-family protein pro... 31 5.5
>X67337-1|CAA47752.1| 551|Homo sapiens Human pre-mRNA cleavage
factor I 68 kDa subunit protein.
Length = 551
Score = 31.9 bits (69), Expect = 3.2
Identities = 20/69 (28%), Positives = 22/69 (31%), Gaps = 2/69 (2%)
Frame = +1
Query: 589 PXAGXXVXPXIXGXPXXKTFEPXXXQXAXNP*KXPVXXXFPXGXPP--PXXXXPKIPPPN 762
P G + P + G P P P P P G PP P P PPP
Sbjct: 253 PPPGQVLPPPLAGPPNRGDRPPPPVLFPGQPFGQPPLGPLPPGPPPPVPGYGPPPGPPPP 312
Query: 763 XXGXXTPXG 789
G P G
Sbjct: 313 QQGPPPPPG 321
>X67336-1|CAA47751.1| 551|Homo sapiens HPBRII-7 protein.
Length = 551
Score = 31.9 bits (69), Expect = 3.2
Identities = 20/69 (28%), Positives = 22/69 (31%), Gaps = 2/69 (2%)
Frame = +1
Query: 589 PXAGXXVXPXIXGXPXXKTFEPXXXQXAXNP*KXPVXXXFPXGXPP--PXXXXPKIPPPN 762
P G + P + G P P P P P G PP P P PPP
Sbjct: 253 PPPGQVLPPPLAGPPNRGDRPPPPVLFPGQPFGQPPLGPLPPGPPPPVPGYGPPPGPPPP 312
Query: 763 XXGXXTPXG 789
G P G
Sbjct: 313 QQGPPPPPG 321
>BC000714-1|AAH00714.1| 588|Homo sapiens CPSF6 protein protein.
Length = 588
Score = 31.9 bits (69), Expect = 3.2
Identities = 20/69 (28%), Positives = 22/69 (31%), Gaps = 2/69 (2%)
Frame = +1
Query: 589 PXAGXXVXPXIXGXPXXKTFEPXXXQXAXNP*KXPVXXXFPXGXPP--PXXXXPKIPPPN 762
P G + P + G P P P P P G PP P P PPP
Sbjct: 290 PPPGQVLPPPLAGPPNRGDRPPPPVLFPGQPFGQPPLGPLPPGPPPPVPGYGPPPGPPPP 349
Query: 763 XXGXXTPXG 789
G P G
Sbjct: 350 QQGPPPPPG 358
>AK223568-1|BAD97288.1| 551|Homo sapiens cleavage and
polyadenylation specific factor 6, 68 kD subunit variant
protein.
Length = 551
Score = 31.9 bits (69), Expect = 3.2
Identities = 20/69 (28%), Positives = 22/69 (31%), Gaps = 2/69 (2%)
Frame = +1
Query: 589 PXAGXXVXPXIXGXPXXKTFEPXXXQXAXNP*KXPVXXXFPXGXPP--PXXXXPKIPPPN 762
P G + P + G P P P P P G PP P P PPP
Sbjct: 253 PPPGQVLPPPLAGPPNRGDRPPPPVLFPGQPFGQPPLGPLPPGPPPPVPGYGPPPGPPPP 312
Query: 763 XXGXXTPXG 789
G P G
Sbjct: 313 QQGPPPPPG 321
>BC040943-1|AAH40943.1| 498|Homo sapiens WAS protein family, member
2 protein.
Length = 498
Score = 31.1 bits (67), Expect = 5.5
Identities = 17/47 (36%), Positives = 18/47 (38%)
Frame = +2
Query: 701 GFFPXAXXPPXXPXXKFXPPIXXVGKPPXGFKKNXXXPPKNPXXXPP 841
GF P PP P PP PP GF PP +P PP
Sbjct: 315 GFAPPPAPPPPPPPMIGIPP----PPPPVGFGSPGTPPPPSPPSFPP 357
>BC019928-1|AAH19928.1| 201|Homo sapiens LPHN1 protein protein.
Length = 201
Score = 31.1 bits (67), Expect = 5.5
Identities = 15/36 (41%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Frame = -3
Query: 528 AEGRPIRKP--PLPARWPIH*CRKNLPHLPLNLKHK 427
A G P P P P RWP+H C P L + HK
Sbjct: 121 APGHPSPAPALPFPQRWPLHLCSDLSPSLCPSFSHK 156
>AL096774-6|CAC18518.1| 498|Homo sapiens WAS protein family, member
2 protein.
Length = 498
Score = 31.1 bits (67), Expect = 5.5
Identities = 17/47 (36%), Positives = 18/47 (38%)
Frame = +2
Query: 701 GFFPXAXXPPXXPXXKFXPPIXXVGKPPXGFKKNXXXPPKNPXXXPP 841
GF P PP P PP PP GF PP +P PP
Sbjct: 315 GFAPPPAPPPPPPPMIGIPP----PPPPVGFGSPGTPPPPSPPSFPP 357
>AK022001-1|BAB13950.1| 201|Homo sapiens protein ( Homo sapiens
cDNA FLJ11939 fis, clone HEMBB1000592. ).
Length = 201
Score = 31.1 bits (67), Expect = 5.5
Identities = 15/36 (41%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Frame = -3
Query: 528 AEGRPIRKP--PLPARWPIH*CRKNLPHLPLNLKHK 427
A G P P P P RWP+H C P L + HK
Sbjct: 121 APGHPSPAPALPFPQRWPLHLCSDLSPSLCPSFSHK 156
>AB026542-1|BAA81795.1| 498|Homo sapiens WASP-family protein
protein.
Length = 498
Score = 31.1 bits (67), Expect = 5.5
Identities = 17/47 (36%), Positives = 18/47 (38%)
Frame = +2
Query: 701 GFFPXAXXPPXXPXXKFXPPIXXVGKPPXGFKKNXXXPPKNPXXXPP 841
GF P PP P PP PP GF PP +P PP
Sbjct: 315 GFAPPPAPPPPPPPMIGIPP----PPPPVGFGSPGTPPPPSPPSFPP 357
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 89,478,641
Number of Sequences: 237096
Number of extensions: 1666745
Number of successful extensions: 5717
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 4609
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5437
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11215125244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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