Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_E07
         (878 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000298-11|AAM97960.1|  518|Caenorhabditis elegans Prion-like-(...    33   0.36 
AF000298-10|AAM97961.1|  539|Caenorhabditis elegans Prion-like-(...    33   0.36 
AF000298-8|AAC48255.2|  524|Caenorhabditis elegans Prion-like-(q...    33   0.36 

>AF000298-11|AAM97960.1|  518|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform b protein.
          Length = 518

 Score = 32.7 bits (71), Expect = 0.36
 Identities = 15/44 (34%), Positives = 17/44 (38%)
 Frame = +2

Query: 710 PXAXXPPXXPXXKFXPPIXXVGKPPXGFKKNXXXPPKNPXXXPP 841
           P A  PP  P  K  PP+   G PP         PP+     PP
Sbjct: 232 PPAGSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPP 275



 Score = 30.3 bits (65), Expect = 1.9
 Identities = 20/69 (28%), Positives = 22/69 (31%), Gaps = 2/69 (2%)
 Frame = +1

Query: 589 PXAGXXVXPXIXGXPXXKTFEPXXXQXAXNP*KXPVXXXFPXGXPPPXXXXP--KIPPPN 762
           P AG    P     P   T  P       +P   P     P   PPP    P   +PPP 
Sbjct: 259 PAAGSPPPPRTGSPPPPPTGSPPPPPAGGSP--PPPRAGSPPPPPPPRGSPPTGSLPPPQ 316

Query: 763 XXGXXTPXG 789
             G   P G
Sbjct: 317 AGGSPPPAG 325


>AF000298-10|AAM97961.1|  539|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform c protein.
          Length = 539

 Score = 32.7 bits (71), Expect = 0.36
 Identities = 15/44 (34%), Positives = 17/44 (38%)
 Frame = +2

Query: 710 PXAXXPPXXPXXKFXPPIXXVGKPPXGFKKNXXXPPKNPXXXPP 841
           P A  PP  P  K  PP+   G PP         PP+     PP
Sbjct: 253 PPAGSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPP 296



 Score = 30.3 bits (65), Expect = 1.9
 Identities = 20/69 (28%), Positives = 22/69 (31%), Gaps = 2/69 (2%)
 Frame = +1

Query: 589 PXAGXXVXPXIXGXPXXKTFEPXXXQXAXNP*KXPVXXXFPXGXPPPXXXXP--KIPPPN 762
           P AG    P     P   T  P       +P   P     P   PPP    P   +PPP 
Sbjct: 280 PAAGSPPPPRTGSPPPPPTGSPPPPPAGGSP--PPPRAGSPPPPPPPRGSPPTGSLPPPQ 337

Query: 763 XXGXXTPXG 789
             G   P G
Sbjct: 338 AGGSPPPAG 346


>AF000298-8|AAC48255.2|  524|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform a protein.
          Length = 524

 Score = 32.7 bits (71), Expect = 0.36
 Identities = 15/44 (34%), Positives = 17/44 (38%)
 Frame = +2

Query: 710 PXAXXPPXXPXXKFXPPIXXVGKPPXGFKKNXXXPPKNPXXXPP 841
           P A  PP  P  K  PP+   G PP         PP+     PP
Sbjct: 238 PPAGSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPP 281



 Score = 30.3 bits (65), Expect = 1.9
 Identities = 20/69 (28%), Positives = 22/69 (31%), Gaps = 2/69 (2%)
 Frame = +1

Query: 589 PXAGXXVXPXIXGXPXXKTFEPXXXQXAXNP*KXPVXXXFPXGXPPPXXXXP--KIPPPN 762
           P AG    P     P   T  P       +P   P     P   PPP    P   +PPP 
Sbjct: 265 PAAGSPPPPRTGSPPPPPTGSPPPPPAGGSP--PPPRAGSPPPPPPPRGSPPTGSLPPPQ 322

Query: 763 XXGXXTPXG 789
             G   P G
Sbjct: 323 AGGSPPPAG 331


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,744,822
Number of Sequences: 27780
Number of extensions: 246368
Number of successful extensions: 682
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 535
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 640
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2213393798
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)