Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_E07
         (878 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g20830.1 68416.m02634 protein kinase family protein contains ...    28   7.2  
At1g10620.1 68414.m01204 protein kinase family protein contains ...    28   7.2  
At4g38770.1 68417.m05490 proline-rich family protein (PRP4) simi...    28   9.5  

>At3g20830.1 68416.m02634 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 408

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = -3

Query: 516 PIRKPPLPARWPIH*CRKNLPHL 448
           P   PP P R P H CRKN P +
Sbjct: 384 PSSAPPSPLRSPPHVCRKNDPFI 406


>At1g10620.1 68414.m01204 protein kinase family protein contains
           serine/threonine protein kinases active-site signature,
           PROSITE:PS00108
          Length = 718

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 15/46 (32%), Positives = 17/46 (36%), Gaps = 2/46 (4%)
 Frame = +2

Query: 710 PXAXXPPXXPXX--KFXPPIXXVGKPPXGFKKNXXXPPKNPXXXPP 841
           P A  PP  P    +  PP     +PP     N   PP  P   PP
Sbjct: 43  PPATSPPSPPSPDTQTSPPPATAAQPPPNQPPNTTPPPTPPSSPPP 88


>At4g38770.1 68417.m05490 proline-rich family protein (PRP4) similar
           to proline-rich protein [Arabidopsis thaliana]
           gi|6782442|gb|AAF28388; contains proline-rich extensin
           domains, INTERPRO:IPR002965
          Length = 448

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 16/46 (34%), Positives = 19/46 (41%)
 Frame = +2

Query: 710 PXAXXPPXXPXXKFXPPIXXVGKPPXGFKKNXXXPPKNPXXXPPXK 847
           P    PP  P  +  PP+    KPP   +K    PP  P   PP K
Sbjct: 242 PKKPCPPKPPKIEHPPPVPVY-KPPPKIEK----PPPVPVYKPPPK 282


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,757,178
Number of Sequences: 28952
Number of extensions: 220991
Number of successful extensions: 844
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 545
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 778
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2067932800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)