Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_E06
         (962 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ655702-1|ABG45862.1|  889|Anopheles gambiae Jxc1 protein.            29   0.28 
AJ438610-1|CAD27473.1|  838|Anopheles gambiae putative microtubu...    27   0.64 
AJ439398-8|CAD28131.1| 1283|Anopheles gambiae putative different...    25   4.5  

>DQ655702-1|ABG45862.1|  889|Anopheles gambiae Jxc1 protein.
          Length = 889

 Score = 28.7 bits (61), Expect = 0.28
 Identities = 16/45 (35%), Positives = 17/45 (37%), Gaps = 1/45 (2%)
 Frame = +2

Query: 806 PAXXPSRXKXXXIPXPPPPPXXXPGP-XFALXPPPXPXXXXPXXP 937
           PA  P+       P PPPPP   P P   A  P   P    P  P
Sbjct: 570 PAGFPNLPNAQPPPAPPPPPPMGPPPSPLAGGPLGGPAGSRPPLP 614



 Score = 25.8 bits (54), Expect = 2.0
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = +1

Query: 433 PPPXTPPAXPXXGGXXGXASPGSR 504
           PPP  PP  P  GG  G  + GSR
Sbjct: 588 PPPMGPPPSPLAGGPLGGPA-GSR 610



 Score = 24.6 bits (51), Expect = 4.5
 Identities = 17/65 (26%), Positives = 20/65 (30%)
 Frame = +3

Query: 516 PPPPXGXXXXPXXRXXPGXHXXXKXPGXXXKPKXGRXPPPXPKXPPPAXSWXXPDTPLPX 695
           PPPP G       +  P      + P     P   R P   P  P    +   P  P P 
Sbjct: 533 PPPPGGAVLNIPPQFLPPPLNLLRAPFFPLNPAQLRFPAGFPNLP---NAQPPPAPPPPP 589

Query: 696 XXNPP 710
              PP
Sbjct: 590 PMGPP 594



 Score = 23.8 bits (49), Expect = 7.9
 Identities = 13/48 (27%), Positives = 14/48 (29%), Gaps = 1/48 (2%)
 Frame = +3

Query: 519 PPPXGXXXXPXXRXXPGX-HXXXKXPGXXXKPKXGRXPPPXPKXPPPA 659
           PPP      P     P         P           PPP P  PPP+
Sbjct: 549 PPPLNLLRAPFFPLNPAQLRFPAGFPNLPNAQPPPAPPPPPPMGPPPS 596


>AJ438610-1|CAD27473.1|  838|Anopheles gambiae putative microtubule
           binding protein protein.
          Length = 838

 Score = 27.5 bits (58), Expect = 0.64
 Identities = 19/72 (26%), Positives = 22/72 (30%), Gaps = 2/72 (2%)
 Frame = +2

Query: 737 PPXTXPXXRLPXPXPXXXXPXPAPAXXPSRXKXXXIPXPPPPPXXXPGPXFA--LXPPPX 910
           PP T    +   P P    P P     P R +      P   P   P P  A  +  PP 
Sbjct: 200 PPRTGTPTQPQPPRPGGMYPQPPGVPMPMRPQMPPGAVPGMQPGMQPRPPSAQGMQRPPM 259

Query: 911 PXXXXPXXPXXP 946
                P  P  P
Sbjct: 260 MGQPPPIRPPNP 271



 Score = 26.6 bits (56), Expect = 1.1
 Identities = 16/59 (27%), Positives = 16/59 (27%)
 Frame = +2

Query: 437 PXXPPPPXXXXXXGGXXPVPXPXXXXPPPPXXXXGXPXXPGXPRXXPXXQKXGXRPETQ 613
           P  PP P      G   P        P PP      P  PG P         G  P  Q
Sbjct: 183 PGMPPGPQMMRPPGNVGPPRTGTPTQPQPPRPGGMYPQPPGVPMPMRPQMPPGAVPGMQ 241


>AJ439398-8|CAD28131.1| 1283|Anopheles gambiae putative
           differentiation regulator protein.
          Length = 1283

 Score = 24.6 bits (51), Expect = 4.5
 Identities = 13/27 (48%), Positives = 13/27 (48%)
 Frame = -1

Query: 290 GXXXXGGAPXFXGXFFXGGPXPPXGGG 210
           G    GGAP   G    GGP P  GGG
Sbjct: 204 GGGSGGGAPGGGGGS-SGGPGPGGGGG 229



 Score = 23.8 bits (49), Expect = 7.9
 Identities = 11/22 (50%), Positives = 11/22 (50%)
 Frame = -3

Query: 276 GGGAXXXGXFFXGGXPPPXGGG 211
           GGGA   G    GG  P  GGG
Sbjct: 208 GGGAPGGGGGSSGGPGPGGGGG 229


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.316    0.152    0.532 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 607,676
Number of Sequences: 2352
Number of extensions: 11587
Number of successful extensions: 81
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67
length of database: 563,979
effective HSP length: 64
effective length of database: 413,451
effective search space used: 105843456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)