Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP01_F_E05
(895 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P62318 Cluster: Small nuclear ribonucleoprotein Sm D3; ... 96 1e-18
UniRef50_Q17348 Cluster: Small nuclear ribonucleoprotein Sm D3; ... 81 5e-14
UniRef50_Q5KLG7 Cluster: Pre-mRNA splicing factor, putative; n=1... 73 8e-12
UniRef50_Q9LMW6 Cluster: F5M15.9; n=4; Arabidopsis thaliana|Rep:... 69 1e-10
UniRef50_Q5CSL0 Cluster: Small nucealr riboprotein SMD3, SM doma... 69 2e-10
UniRef50_UPI0000498C5A Cluster: small nuclear ribonucleoprotein;... 68 4e-10
UniRef50_A1CHW9 Cluster: Small nuclear ribonucleoprotein SmD3, p... 68 4e-10
UniRef50_A7PSI3 Cluster: Chromosome chr6 scaffold_28, whole geno... 65 2e-09
UniRef50_P43321 Cluster: Small nuclear ribonucleoprotein Sm D3; ... 61 4e-08
UniRef50_Q7RIW4 Cluster: Putative uncharacterized protein PY0350... 60 6e-08
UniRef50_UPI0000D8A096 Cluster: small nuclear ribonucleoprotein ... 60 7e-08
UniRef50_A2E8V8 Cluster: Sm protein; n=1; Trichomonas vaginalis ... 58 4e-07
UniRef50_A0CT01 Cluster: Chromosome undetermined scaffold_266, w... 58 4e-07
UniRef50_A0C2U8 Cluster: Chromosome undetermined scaffold_145, w... 58 4e-07
UniRef50_Q8SW39 Cluster: Similarity to SMALL NUCLEAR RIBONUCLEOP... 54 6e-06
UniRef50_Q0UDD7 Cluster: Putative uncharacterized protein; n=1; ... 52 2e-05
UniRef50_Q4Y7X8 Cluster: Small nuclear ribonucleoprotein (SnRNP)... 50 6e-05
UniRef50_A2DK14 Cluster: Sm protein; n=1; Trichomonas vaginalis ... 49 1e-04
UniRef50_Q9AW42 Cluster: Putative small nuclear ribonucleoprotei... 44 0.007
UniRef50_Q3LW05 Cluster: Spliceosomal snRNA-associated Sm core p... 42 0.016
UniRef50_Q4Q2F6 Cluster: Small nuclear ribonucleoprotein, putati... 41 0.049
UniRef50_A7PS14 Cluster: Chromosome chr14 scaffold_27, whole gen... 36 1.4
UniRef50_A5AUJ3 Cluster: Putative uncharacterized protein; n=1; ... 36 1.4
UniRef50_Q254S4 Cluster: Adherence factor; n=2; Chlamydophila|Re... 34 4.3
UniRef50_A4VAK3 Cluster: Small nuclear ribonucleoprotein D1; n=7... 34 5.6
UniRef50_Q0HT08 Cluster: Transcriptional regulator, TetR family;... 33 7.4
UniRef50_Q9LMW8 Cluster: F5M15.7; n=3; Arabidopsis thaliana|Rep:... 33 7.4
UniRef50_Q54KX4 Cluster: LSM (Like-Sm) domain-containing protein... 33 7.4
UniRef50_P62314 Cluster: Small nuclear ribonucleoprotein Sm D1; ... 33 7.4
UniRef50_Q9LGE6 Cluster: Probable U6 snRNA-associated Sm-like pr... 33 7.4
UniRef50_Q38BA6 Cluster: Small nuclear ribonucleoprotein, putati... 33 9.8
>UniRef50_P62318 Cluster: Small nuclear ribonucleoprotein Sm D3;
n=40; Fungi/Metazoa group|Rep: Small nuclear
ribonucleoprotein Sm D3 - Homo sapiens (Human)
Length = 126
Score = 95.9 bits (228), Expect = 1e-18
Identities = 42/44 (95%), Positives = 44/44 (100%)
Frame = +3
Query: 180 MSIGVPIKVLHEAEGHVVTCETNTGEVYRGKLIEAEDNMNCQMT 311
MSIGVPIKVLHEAEGH+VTCETNTGEVYRGKLIEAEDNMNCQM+
Sbjct: 1 MSIGVPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMS 44
Score = 89.8 bits (213), Expect = 8e-17
Identities = 46/59 (77%), Positives = 49/59 (83%), Gaps = 3/59 (5%)
Frame = +1
Query: 313 SLTVTYRDGRVAQLENVYIRGSKIRFLILPDMLKNAPMFKRQGNK---PTAGRGKSAIL 480
++TVTYRDGRVAQLE VYIRGSKIRFLILPDMLKNAPM K NK AGRGK+AIL
Sbjct: 45 NITVTYRDGRVAQLEQVYIRGSKIRFLILPDMLKNAPMLKSMKNKNQGSGAGRGKAAIL 103
>UniRef50_Q17348 Cluster: Small nuclear ribonucleoprotein Sm D3;
n=3; Eukaryota|Rep: Small nuclear ribonucleoprotein Sm
D3 - Caenorhabditis elegans
Length = 136
Score = 80.6 bits (190), Expect = 5e-14
Identities = 35/42 (83%), Positives = 39/42 (92%)
Frame = +3
Query: 183 SIGVPIKVLHEAEGHVVTCETNTGEVYRGKLIEAEDNMNCQM 308
S+GVPIK+LHEAEGH+VT ET TGEVYRGKL EAEDNMNCQ+
Sbjct: 3 SVGVPIKILHEAEGHMVTLETVTGEVYRGKLSEAEDNMNCQL 44
Score = 69.7 bits (163), Expect = 9e-11
Identities = 31/40 (77%), Positives = 36/40 (90%)
Frame = +1
Query: 322 VTYRDGRVAQLENVYIRGSKIRFLILPDMLKNAPMFKRQG 441
VT+RDGR QL+NV+IRG+KIRF+ILPDMLKNAPMFK G
Sbjct: 49 VTFRDGRSHQLDNVFIRGNKIRFMILPDMLKNAPMFKNIG 88
>UniRef50_Q5KLG7 Cluster: Pre-mRNA splicing factor, putative; n=12;
Eukaryota|Rep: Pre-mRNA splicing factor, putative -
Cryptococcus neoformans (Filobasidiella neoformans)
Length = 124
Score = 73.3 bits (172), Expect = 8e-12
Identities = 35/53 (66%), Positives = 40/53 (75%)
Frame = +1
Query: 316 LTVTYRDGRVAQLENVYIRGSKIRFLILPDMLKNAPMFKRQGNKPTAGRGKSA 474
+TVT RDGRV+QLE VYIRGS IRF+I+PD+L APMFKR G GRG A
Sbjct: 47 ITVTARDGRVSQLEQVYIRGSMIRFIIVPDLLAQAPMFKRIGPNAMRGRGIGA 99
Score = 62.5 bits (145), Expect = 1e-08
Identities = 24/39 (61%), Positives = 34/39 (87%)
Frame = +3
Query: 183 SIGVPIKVLHEAEGHVVTCETNTGEVYRGKLIEAEDNMN 299
++GVP+K+LHE+ GH++T E TGE+YRGKL+EAED +N
Sbjct: 3 NLGVPVKLLHESLGHIITVELKTGEMYRGKLMEAEDTLN 41
>UniRef50_Q9LMW6 Cluster: F5M15.9; n=4; Arabidopsis thaliana|Rep:
F5M15.9 - Arabidopsis thaliana (Mouse-ear cress)
Length = 207
Score = 69.3 bits (162), Expect = 1e-10
Identities = 26/45 (57%), Positives = 37/45 (82%)
Frame = +3
Query: 174 VNMSIGVPIKVLHEAEGHVVTCETNTGEVYRGKLIEAEDNMNCQM 308
++ S+G+P+K+LHEA GH+VT E +GE+YRG +IE EDN NCQ+
Sbjct: 1 MSRSLGIPVKLLHEASGHIVTVELKSGELYRGSMIECEDNWNCQL 45
Score = 37.9 bits (84), Expect(2) = 2e-05
Identities = 15/24 (62%), Positives = 22/24 (91%)
Frame = +1
Query: 316 LTVTYRDGRVAQLENVYIRGSKIR 387
+T T +DG+V+QLE+V+IRGSK+R
Sbjct: 48 ITYTAKDGKVSQLEHVFIRGSKVR 71
Score = 33.9 bits (74), Expect(2) = 2e-05
Identities = 12/17 (70%), Positives = 17/17 (100%)
Frame = +1
Query: 385 RFLILPDMLKNAPMFKR 435
RF+++PD+LK+APMFKR
Sbjct: 102 RFMVIPDILKHAPMFKR 118
>UniRef50_Q5CSL0 Cluster: Small nucealr riboprotein SMD3, SM domain;
n=5; Apicomplexa|Rep: Small nucealr riboprotein SMD3, SM
domain - Cryptosporidium parvum Iowa II
Length = 143
Score = 68.9 bits (161), Expect = 2e-10
Identities = 27/64 (42%), Positives = 44/64 (68%)
Frame = +3
Query: 171 NVNMSIGVPIKVLHEAEGHVVTCETNTGEVYRGKLIEAEDNMNCQMTLVNSHIQRWPSCT 350
++NM+IG+P+K+L+E GH+VT E +G++YRG L EDNMNC + VN+ ++ +
Sbjct: 20 HINMTIGIPLKLLYEGLGHIVTIELKSGDLYRGTLTHVEDNMNCMLEHVNATMRDGKPVS 79
Query: 351 AREC 362
+C
Sbjct: 80 LEQC 83
Score = 60.5 bits (140), Expect = 6e-08
Identities = 27/43 (62%), Positives = 31/43 (72%)
Frame = +1
Query: 316 LTVTYRDGRVAQLENVYIRGSKIRFLILPDMLKNAPMFKRQGN 444
+ T RDG+ LE Y+RGS+IRF ILPDMLKNAPMFK N
Sbjct: 68 VNATMRDGKPVSLEQCYLRGSQIRFCILPDMLKNAPMFKLAAN 110
>UniRef50_UPI0000498C5A Cluster: small nuclear ribonucleoprotein;
n=1; Entamoeba histolytica HM-1:IMSS|Rep: small nuclear
ribonucleoprotein - Entamoeba histolytica HM-1:IMSS
Length = 111
Score = 67.7 bits (158), Expect = 4e-10
Identities = 25/43 (58%), Positives = 35/43 (81%)
Frame = +3
Query: 180 MSIGVPIKVLHEAEGHVVTCETNTGEVYRGKLIEAEDNMNCQM 308
M+IG P+K+ HE++G +VT E TGE YRG+++E EDNMNCQ+
Sbjct: 1 MNIGAPLKIFHESKGTIVTIEVKTGETYRGRMVETEDNMNCQL 43
Score = 48.0 bits (109), Expect = 3e-04
Identities = 17/39 (43%), Positives = 31/39 (79%)
Frame = +1
Query: 316 LTVTYRDGRVAQLENVYIRGSKIRFLILPDMLKNAPMFK 432
+T+T +DG ++ E ++IRG+++RF++LP+M KN+P K
Sbjct: 46 VTITAKDGSQSRTEYIFIRGNQVRFVVLPEMFKNSPCLK 84
>UniRef50_A1CHW9 Cluster: Small nuclear ribonucleoprotein SmD3,
putative; n=12; Eukaryota|Rep: Small nuclear
ribonucleoprotein SmD3, putative - Aspergillus clavatus
Length = 136
Score = 67.7 bits (158), Expect = 4e-10
Identities = 29/42 (69%), Positives = 37/42 (88%)
Frame = +3
Query: 183 SIGVPIKVLHEAEGHVVTCETNTGEVYRGKLIEAEDNMNCQM 308
+IG+PIK+L+EA+GHVVT E +G VYRGKL+EAEDNMN Q+
Sbjct: 7 TIGIPIKLLNEAQGHVVTLEITSGVVYRGKLLEAEDNMNVQL 48
Score = 50.8 bits (116), Expect = 5e-05
Identities = 21/33 (63%), Positives = 28/33 (84%)
Frame = +1
Query: 316 LTVTYRDGRVAQLENVYIRGSKIRFLILPDMLK 414
+TVT RDGRV+ L+ VYIRGS ++F I+PDML+
Sbjct: 51 ITVTARDGRVSHLDQVYIRGSHVKFFIVPDMLR 83
>UniRef50_A7PSI3 Cluster: Chromosome chr6 scaffold_28, whole genome
shotgun sequence; n=6; Eukaryota|Rep: Chromosome chr6
scaffold_28, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 199
Score = 65.3 bits (152), Expect = 2e-09
Identities = 25/45 (55%), Positives = 36/45 (80%)
Frame = +3
Query: 174 VNMSIGVPIKVLHEAEGHVVTCETNTGEVYRGKLIEAEDNMNCQM 308
++ S+G+P+K+LHEA GHVV E +GE+YRG +IE +DN NCQ+
Sbjct: 1 MSRSLGIPVKLLHEAAGHVVIVELKSGELYRGSMIECKDNWNCQL 45
Score = 65.3 bits (152), Expect = 2e-09
Identities = 26/41 (63%), Positives = 37/41 (90%)
Frame = +1
Query: 313 SLTVTYRDGRVAQLENVYIRGSKIRFLILPDMLKNAPMFKR 435
++T T +DG+V+QLE+V+IRG K+RF+++PDM KNAPMFKR
Sbjct: 47 NITFTVKDGKVSQLEHVFIRGIKVRFMVIPDMRKNAPMFKR 87
>UniRef50_P43321 Cluster: Small nuclear ribonucleoprotein Sm D3;
n=11; Saccharomycetales|Rep: Small nuclear
ribonucleoprotein Sm D3 - Saccharomyces cerevisiae
(Baker's yeast)
Length = 101
Score = 60.9 bits (141), Expect = 4e-08
Identities = 23/40 (57%), Positives = 34/40 (85%)
Frame = +3
Query: 189 GVPIKVLHEAEGHVVTCETNTGEVYRGKLIEAEDNMNCQM 308
G+P+K+L+EA+GH+V+ E TG YRGKL+E+ED+MN Q+
Sbjct: 5 GIPVKLLNEAQGHIVSLELTTGATYRGKLVESEDSMNVQL 44
Score = 53.6 bits (123), Expect = 6e-06
Identities = 18/42 (42%), Positives = 33/42 (78%)
Frame = +1
Query: 325 TYRDGRVAQLENVYIRGSKIRFLILPDMLKNAPMFKRQGNKP 450
T G V ++ +++RGS+I+F+++PD+LKNAP+FK+ ++P
Sbjct: 50 TEPQGAVTHMDQIFVRGSQIKFIVVPDLLKNAPLFKKNSSRP 91
>UniRef50_Q7RIW4 Cluster: Putative uncharacterized protein PY03502;
n=2; Plasmodium (Vinckeia)|Rep: Putative uncharacterized
protein PY03502 - Plasmodium yoelii yoelii
Length = 215
Score = 60.5 bits (140), Expect = 6e-08
Identities = 25/46 (54%), Positives = 35/46 (76%)
Frame = +3
Query: 180 MSIGVPIKVLHEAEGHVVTCETNTGEVYRGKLIEAEDNMNCQMTLV 317
MS+G PIK++HE GH ++ ET +G +YRG L+ AEDNMNC ++ V
Sbjct: 1 MSVGTPIKLIHEGIGHTISVETKSGILYRGILLFAEDNMNCLLSNV 46
Score = 41.1 bits (92), Expect = 0.037
Identities = 17/32 (53%), Positives = 23/32 (71%)
Frame = +1
Query: 352 LENVYIRGSKIRFLILPDMLKNAPMFKRQGNK 447
L+ VYIRG + F+I PDML+ AP+FK +K
Sbjct: 114 LQQVYIRGGSVSFMIFPDMLRYAPIFKVNKSK 145
>UniRef50_UPI0000D8A096 Cluster: small nuclear ribonucleoprotein
(snrnp),putative; n=1; Eimeria tenella|Rep: small
nuclear ribonucleoprotein (snrnp),putative - Eimeria
tenella
Length = 125
Score = 60.1 bits (139), Expect = 7e-08
Identities = 24/39 (61%), Positives = 30/39 (76%)
Frame = +3
Query: 183 SIGVPIKVLHEAEGHVVTCETNTGEVYRGKLIEAEDNMN 299
S+G+P+K+LHE GH +T ET TG +YRG L AEDNMN
Sbjct: 6 SVGIPVKLLHEGLGHTITVETKTGSLYRGTLENAEDNMN 44
Score = 59.3 bits (137), Expect = 1e-07
Identities = 24/39 (61%), Positives = 34/39 (87%)
Frame = +1
Query: 316 LTVTYRDGRVAQLENVYIRGSKIRFLILPDMLKNAPMFK 432
+TVT++DG+V LE VYIRGS+++ +I PDML++APMFK
Sbjct: 50 VTVTHKDGKVLSLEQVYIRGSQVQMVIFPDMLRHAPMFK 88
>UniRef50_A2E8V8 Cluster: Sm protein; n=1; Trichomonas vaginalis
G3|Rep: Sm protein - Trichomonas vaginalis G3
Length = 112
Score = 57.6 bits (133), Expect = 4e-07
Identities = 29/52 (55%), Positives = 34/52 (65%)
Frame = +3
Query: 180 MSIGVPIKVLHEAEGHVVTCETNTGEVYRGKLIEAEDNMNCQMTLVNSHIQR 335
MS G+PIK+LHEA VV NTG+ YRG L EDNMNC +T V H Q+
Sbjct: 1 MSNGIPIKLLHEATNFVVEIHLNTGDSYRGTLKYVEDNMNCWLTNV-VHTQK 51
Score = 39.1 bits (87), Expect = 0.15
Identities = 16/36 (44%), Positives = 24/36 (66%)
Frame = +1
Query: 325 TYRDGRVAQLENVYIRGSKIRFLILPDMLKNAPMFK 432
T +DG+ + + Y+RGS I + LP+ML NA +FK
Sbjct: 49 TQKDGQQIKFDKTYVRGSNILYFDLPEMLLNARLFK 84
>UniRef50_A0CT01 Cluster: Chromosome undetermined scaffold_266,
whole genome shotgun sequence; n=2; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_266,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 363
Score = 57.6 bits (133), Expect = 4e-07
Identities = 23/43 (53%), Positives = 33/43 (76%)
Frame = +3
Query: 180 MSIGVPIKVLHEAEGHVVTCETNTGEVYRGKLIEAEDNMNCQM 308
MS+GVP+K++HEA H+VT E TGE++ G + EAED MN ++
Sbjct: 1 MSLGVPLKIMHEAVHHIVTVELKTGEMFTGYMAEAEDTMNVRL 43
Score = 54.0 bits (124), Expect = 5e-06
Identities = 22/35 (62%), Positives = 29/35 (82%)
Frame = +1
Query: 331 RDGRVAQLENVYIRGSKIRFLILPDMLKNAPMFKR 435
RDGR LE VY+RGS+IRF+++PD+ K APMFK+
Sbjct: 51 RDGRPMSLEQVYLRGSQIRFVVIPDVFKYAPMFKK 85
>UniRef50_A0C2U8 Cluster: Chromosome undetermined scaffold_145,
whole genome shotgun sequence; n=5; Eukaryota|Rep:
Chromosome undetermined scaffold_145, whole genome
shotgun sequence - Paramecium tetraurelia
Length = 122
Score = 57.6 bits (133), Expect = 4e-07
Identities = 23/43 (53%), Positives = 33/43 (76%)
Frame = +3
Query: 180 MSIGVPIKVLHEAEGHVVTCETNTGEVYRGKLIEAEDNMNCQM 308
MS+GVP+K++HEA H+VT E TGE++ G + EAED MN ++
Sbjct: 1 MSLGVPLKIMHEAVHHIVTVELKTGEMFTGYMAEAEDTMNVRL 43
Score = 54.0 bits (124), Expect = 5e-06
Identities = 22/35 (62%), Positives = 29/35 (82%)
Frame = +1
Query: 331 RDGRVAQLENVYIRGSKIRFLILPDMLKNAPMFKR 435
RDGR LE VY+RGS+IRF+++PD+ K APMFK+
Sbjct: 51 RDGRPMSLEQVYLRGSQIRFVVIPDVFKYAPMFKK 85
>UniRef50_Q8SW39 Cluster: Similarity to SMALL NUCLEAR
RIBONUCLEOPROTEIN D3; n=1; Encephalitozoon cuniculi|Rep:
Similarity to SMALL NUCLEAR RIBONUCLEOPROTEIN D3 -
Encephalitozoon cuniculi
Length = 87
Score = 53.6 bits (123), Expect = 6e-06
Identities = 20/40 (50%), Positives = 34/40 (85%)
Frame = +3
Query: 180 MSIGVPIKVLHEAEGHVVTCETNTGEVYRGKLIEAEDNMN 299
M++ VP+K+LHE++G +VT ET++G++YRG++ E +D MN
Sbjct: 1 MAVTVPLKLLHESQGFIVTVETSSGDMYRGRVREVDDYMN 40
Score = 34.3 bits (75), Expect = 4.3
Identities = 18/38 (47%), Positives = 24/38 (63%)
Frame = +1
Query: 316 LTVTYRDGRVAQLENVYIRGSKIRFLILPDMLKNAPMF 429
+ VT + +++ E V IRGS IRF +LP LK AP F
Sbjct: 46 VVVTSNNSSLSRKE-VLIRGSSIRFFVLPPALKFAPFF 82
>UniRef50_Q0UDD7 Cluster: Putative uncharacterized protein; n=1;
Phaeosphaeria nodorum|Rep: Putative uncharacterized
protein - Phaeosphaeria nodorum (Septoria nodorum)
Length = 80
Score = 52.4 bits (120), Expect = 2e-05
Identities = 22/34 (64%), Positives = 29/34 (85%)
Frame = +1
Query: 316 LTVTYRDGRVAQLENVYIRGSKIRFLILPDMLKN 417
+TVT RDGRV+ LE VYIRGS +R+ I+PDML++
Sbjct: 8 ITVTARDGRVSHLEQVYIRGSHVRYFIVPDMLRS 41
>UniRef50_Q4Y7X8 Cluster: Small nuclear ribonucleoprotein (SnRNP),
putative; n=4; Plasmodium|Rep: Small nuclear
ribonucleoprotein (SnRNP), putative - Plasmodium
chabaudi
Length = 129
Score = 50.4 bits (115), Expect = 6e-05
Identities = 22/45 (48%), Positives = 31/45 (68%)
Frame = +1
Query: 313 SLTVTYRDGRVAQLENVYIRGSKIRFLILPDMLKNAPMFKRQGNK 447
++TV +DG+ LE VYIRG + F+I PDML+ AP+FK +K
Sbjct: 58 NVTVVKQDGKQVLLEQVYIRGGSVSFMIFPDMLRYAPIFKINKSK 102
Score = 47.6 bits (108), Expect = 4e-04
Identities = 25/59 (42%), Positives = 35/59 (59%), Gaps = 13/59 (22%)
Frame = +3
Query: 180 MSIGVPIKVLHEAEGHVVTCETNTGEVYRGKLI-------------EAEDNMNCQMTLV 317
MS+G PIK++HE GH ++ ET +G +YRG L+ AEDNMNC ++ V
Sbjct: 1 MSVGTPIKLIHEGIGHTISVETKSGILYRGTLVCSFMLILYFLKDLFAEDNMNCLLSNV 59
>UniRef50_A2DK14 Cluster: Sm protein; n=1; Trichomonas vaginalis
G3|Rep: Sm protein - Trichomonas vaginalis G3
Length = 119
Score = 49.2 bits (112), Expect = 1e-04
Identities = 21/37 (56%), Positives = 27/37 (72%)
Frame = +3
Query: 198 IKVLHEAEGHVVTCETNTGEVYRGKLIEAEDNMNCQM 308
I +LHEA+G VVT ET GE+YRG L +ED MN ++
Sbjct: 12 IAILHEADGFVVTIETKQGEMYRGTLFGSEDTMNVEL 48
Score = 42.7 bits (96), Expect = 0.012
Identities = 20/38 (52%), Positives = 24/38 (63%)
Frame = +1
Query: 316 LTVTYRDGRVAQLENVYIRGSKIRFLILPDMLKNAPMF 429
+T T G + + VYIRGS I F +LPDM NAPMF
Sbjct: 51 VTYTNSKGVDSHKDKVYIRGSNIVFFVLPDMFANAPMF 88
>UniRef50_Q9AW42 Cluster: Putative small nuclear ribonucleoprotein
Sm D3; n=1; Guillardia theta|Rep: Putative small nuclear
ribonucleoprotein Sm D3 - Guillardia theta (Cryptomonas
phi)
Length = 79
Score = 43.6 bits (98), Expect = 0.007
Identities = 17/33 (51%), Positives = 24/33 (72%)
Frame = +3
Query: 204 VLHEAEGHVVTCETNTGEVYRGKLIEAEDNMNC 302
+L E++ +V+T E G +YRGKLI E+NMNC
Sbjct: 9 ILRESKPYVITIECKNGFIYRGKLIHIEENMNC 41
>UniRef50_Q3LW05 Cluster: Spliceosomal snRNA-associated Sm core
protein required for pre-mRNA splicing; n=1;
Bigelowiella natans|Rep: Spliceosomal snRNA-associated
Sm core protein required for pre-mRNA splicing -
Bigelowiella natans (Pedinomonas minutissima)
(Chlorarachnion sp.(strain CCMP 621))
Length = 141
Score = 42.3 bits (95), Expect = 0.016
Identities = 14/43 (32%), Positives = 31/43 (72%)
Frame = +3
Query: 171 NVNMSIGVPIKVLHEAEGHVVTCETNTGEVYRGKLIEAEDNMN 299
+ + ++G+P+K++H+AE H ++ + G++ G+L+ +EDN N
Sbjct: 3 STSKNVGIPLKLIHQAEKHQISVKLKDGKLLIGELMNSEDNWN 45
>UniRef50_Q4Q2F6 Cluster: Small nuclear ribonucleoprotein, putative;
n=6; Trypanosomatidae|Rep: Small nuclear
ribonucleoprotein, putative - Leishmania major
Length = 113
Score = 40.7 bits (91), Expect = 0.049
Identities = 22/55 (40%), Positives = 31/55 (56%), Gaps = 5/55 (9%)
Frame = +1
Query: 319 TVTYRDGRVAQLENVYIRGSKIRFLILPDMLKNAPMFKRQGN-----KPTAGRGK 468
T T R G+ ++++V++RGS I F LPD L+ +P R G K T G GK
Sbjct: 47 TKTARGGKETKMDSVFVRGSNIVFFQLPDALQTSPALLRAGEVVSKAKDTRGDGK 101
Score = 38.7 bits (86), Expect = 0.20
Identities = 19/40 (47%), Positives = 26/40 (65%)
Frame = +3
Query: 180 MSIGVPIKVLHEAEGHVVTCETNTGEVYRGKLIEAEDNMN 299
M+ +PIKVL +A V+ E TGEVY G + E ++NMN
Sbjct: 1 MAESIPIKVLFDALHLKVSIEVATGEVYHGTVEELQNNMN 40
>UniRef50_A7PS14 Cluster: Chromosome chr14 scaffold_27, whole genome
shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
chr14 scaffold_27, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 281
Score = 35.9 bits (79), Expect = 1.4
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +3
Query: 189 GVPIKVLHEAEGHVVTCETNTGEVYRGKLIEAEDNMNCQM 308
G+P+ +L A+GH + E GE Y G L+ + MN +
Sbjct: 87 GLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHL 126
>UniRef50_A5AUJ3 Cluster: Putative uncharacterized protein; n=1;
Vitis vinifera|Rep: Putative uncharacterized protein -
Vitis vinifera (Grape)
Length = 394
Score = 35.9 bits (79), Expect = 1.4
Identities = 16/39 (41%), Positives = 25/39 (64%), Gaps = 2/39 (5%)
Frame = +1
Query: 364 YIRGSKIRFLILPDMLKNAPM--FKRQGNKPTAGRGKSA 474
++ GSK+RF+++PDML NAP+ G+ +G G A
Sbjct: 117 HLIGSKVRFMVIPDMLTNAPVGNISSSGSLGLSGSGTGA 155
>UniRef50_Q254S4 Cluster: Adherence factor; n=2; Chlamydophila|Rep:
Adherence factor - Chlamydophila felis (strain Fe/C-56)
Length = 3298
Score = 34.3 bits (75), Expect = 4.3
Identities = 12/37 (32%), Positives = 24/37 (64%)
Frame = +2
Query: 437 KGINLLQDEGRVRYCEPKLLVEDEQVEEVGATVEAGK 547
KG++ + DE R+ Y E +L + +++V++ T+E K
Sbjct: 435 KGVDRISDENRIEYLEKELKLSEDEVKQYKETIETNK 471
>UniRef50_A4VAK3 Cluster: Small nuclear ribonucleoprotein D1; n=7;
Eukaryota|Rep: Small nuclear ribonucleoprotein D1 -
Danio rerio (Zebrafish) (Brachydanio rerio)
Length = 93
Score = 33.9 bits (74), Expect = 5.6
Identities = 19/59 (32%), Positives = 33/59 (55%), Gaps = 7/59 (11%)
Frame = +1
Query: 313 SLTVTYRDGRVAQLENVYIRGSKIRFLILPD-------MLKNAPMFKRQGNKPTAGRGK 468
++ +T ++ QLE++ IRG+ IR+ ILPD ++ P K + + AGRG+
Sbjct: 16 AVKMTLKNREPTQLESLSIRGNNIRYFILPDSLPLDTLLVDIEPKVKSKKREAVAGRGR 74
>UniRef50_Q0HT08 Cluster: Transcriptional regulator, TetR family;
n=10; Shewanella|Rep: Transcriptional regulator, TetR
family - Shewanella sp. (strain MR-7)
Length = 203
Score = 33.5 bits (73), Expect = 7.4
Identities = 22/56 (39%), Positives = 31/56 (55%)
Frame = +2
Query: 26 YRESLRF*LDVYGFEASNFFEIFFPIFIVNNLRNNTELLSFIVRFS*LKRKHVYRC 193
YRESLRF LD Y F A+ I++ +ELL+++ RF L+R+ Y C
Sbjct: 55 YRESLRFYLDHYSFGATE--------QILHAQAGLSELLTYLARFVALQREQEYGC 102
>UniRef50_Q9LMW8 Cluster: F5M15.7; n=3; Arabidopsis thaliana|Rep:
F5M15.7 - Arabidopsis thaliana (Mouse-ear cress)
Length = 255
Score = 33.5 bits (73), Expect = 7.4
Identities = 13/18 (72%), Positives = 18/18 (100%)
Frame = +1
Query: 334 DGRVAQLENVYIRGSKIR 387
DG+V+QLE+V+IRGSK+R
Sbjct: 233 DGKVSQLEHVFIRGSKVR 250
>UniRef50_Q54KX4 Cluster: LSM (Like-Sm) domain-containing protein;
n=1; Dictyostelium discoideum AX4|Rep: LSM (Like-Sm)
domain-containing protein - Dictyostelium discoideum AX4
Length = 177
Score = 33.5 bits (73), Expect = 7.4
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +3
Query: 192 VPIKVLHEAEGHVVTCETNTGEVYRGKLIEAEDNMNCQM 308
+P+ +L +GH + E GE Y G L+ ++ MN +
Sbjct: 2 LPLSLLRTGQGHQIMVELKNGETYNGLLVNCDNWMNINL 40
>UniRef50_P62314 Cluster: Small nuclear ribonucleoprotein Sm D1;
n=37; Eukaryota|Rep: Small nuclear ribonucleoprotein Sm
D1 - Homo sapiens (Human)
Length = 119
Score = 33.5 bits (73), Expect = 7.4
Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 7/59 (11%)
Frame = +1
Query: 313 SLTVTYRDGRVAQLENVYIRGSKIRFLILPD-------MLKNAPMFKRQGNKPTAGRGK 468
++ +T ++ QLE + IRG+ IR+ ILPD ++ P K + + AGRG+
Sbjct: 42 AVKMTLKNREPVQLETLSIRGNNIRYFILPDSLPLDTLLVDVEPKVKSKKREAVAGRGR 100
>UniRef50_Q9LGE6 Cluster: Probable U6 snRNA-associated Sm-like
protein LSm4; n=5; Eukaryota|Rep: Probable U6
snRNA-associated Sm-like protein LSm4 - Oryza sativa
subsp. japonica (Rice)
Length = 147
Score = 33.5 bits (73), Expect = 7.4
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +3
Query: 192 VPIKVLHEAEGHVVTCETNTGEVYRGKLIEAEDNMNCQM 308
+P+ +L A+GH + E GE Y G L+ + MN +
Sbjct: 2 LPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHL 40
>UniRef50_Q38BA6 Cluster: Small nuclear ribonucleoprotein, putative;
n=1; Trypanosoma brucei|Rep: Small nuclear
ribonucleoprotein, putative - Trypanosoma brucei
Length = 131
Score = 33.1 bits (72), Expect = 9.8
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = +3
Query: 192 VPIKVLHEAEGHVVTCETNTGEVYRGKLIEAE 287
+P++ + EA G +V ET G VY GKL++ +
Sbjct: 7 IPLRAICEATGFLVKVETTDGSVYDGKLMQLD 38
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 811,151,501
Number of Sequences: 1657284
Number of extensions: 15630319
Number of successful extensions: 36831
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 35418
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36820
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 80751996367
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -