Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP01_F_E05
(895 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0022 - 135655-135717,137426-137482,137559-137678,137762-13... 72 7e-13
03_02_0318 + 7417361-7417519,7417638-7417690,7417770-7417836,741... 71 9e-13
01_01_1089 - 8560008-8560220,8560456-8560977,8561095-8561283,856... 33 0.23
04_04_0192 - 23471346-23471572,23473004-23473195,23474342-234744... 33 0.40
11_06_0711 - 26508228-26508488,26508970-26509084,26509179-265094... 29 5.0
08_02_0926 - 22680661-22680765,22680935-22681084,22681473-22682294 29 6.6
02_04_0509 - 23554609-23555241,23555371-23556318 29 6.6
02_04_0403 - 22622014-22622075,22622159-22622350,22624834-226249... 29 6.6
07_03_1123 - 24152403-24152515,24152761-24152854,24152946-241530... 28 8.7
>02_01_0022 -
135655-135717,137426-137482,137559-137678,137762-137920
Length = 132
Score = 71.7 bits (168), Expect = 7e-13
Identities = 28/45 (62%), Positives = 37/45 (82%)
Frame = +3
Query: 174 VNMSIGVPIKVLHEAEGHVVTCETNTGEVYRGKLIEAEDNMNCQM 308
++ S+G+P+K+LHEA GHVVT E TGEVYRG ++E EDN NCQ+
Sbjct: 1 MSRSLGIPVKLLHEAAGHVVTVELKTGEVYRGSMVECEDNWNCQL 45
Score = 68.9 bits (161), Expect = 5e-12
Identities = 28/41 (68%), Positives = 39/41 (95%)
Frame = +1
Query: 313 SLTVTYRDGRVAQLENVYIRGSKIRFLILPDMLKNAPMFKR 435
++T T +DG+V+QLE+V+IRGS++RF+I+PDMLKNAPMFKR
Sbjct: 47 NITFTAKDGKVSQLEHVFIRGSRVRFMIIPDMLKNAPMFKR 87
>03_02_0318 +
7417361-7417519,7417638-7417690,7417770-7417836,
7417925-7417981,7420005-7420067
Length = 132
Score = 71.3 bits (167), Expect = 9e-13
Identities = 28/45 (62%), Positives = 37/45 (82%)
Frame = +3
Query: 174 VNMSIGVPIKVLHEAEGHVVTCETNTGEVYRGKLIEAEDNMNCQM 308
++ S+G+P+K+LHEA GHVVT E TGEVYRG ++E EDN NCQ+
Sbjct: 1 MSRSLGIPVKLLHEAAGHVVTVELKTGEVYRGAMVECEDNWNCQL 45
Score = 68.9 bits (161), Expect = 5e-12
Identities = 28/41 (68%), Positives = 39/41 (95%)
Frame = +1
Query: 313 SLTVTYRDGRVAQLENVYIRGSKIRFLILPDMLKNAPMFKR 435
++T T +DG+V+QLE+V+IRGS++RF+I+PDMLKNAPMFKR
Sbjct: 47 NITFTAKDGKVSQLEHVFIRGSRVRFMIIPDMLKNAPMFKR 87
>01_01_1089 -
8560008-8560220,8560456-8560977,8561095-8561283,
8561377-8561642,8561967-8562111,8562411-8562530,
8562611-8562930,8564161-8564341,8564434-8564580,
8565186-8565497,8566303-8566450,8566592-8566765,
8567385-8567446,8567499-8567571,8567628-8567683,
8568370-8568645,8569541-8569588,8569870-8569991,
8570258-8570413,8571037-8571079,8572624-8572701,
8572972-8573070,8573168-8573209,8573302-8573304
Length = 1264
Score = 33.5 bits (73), Expect = 0.23
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +3
Query: 192 VPIKVLHEAEGHVVTCETNTGEVYRGKLIEAEDNMNCQM 308
+P+ +L A+GH + E GE Y G L+ + MN +
Sbjct: 2 LPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHL 40
>04_04_0192 -
23471346-23471572,23473004-23473195,23474342-23474418,
23475810-23475850,23475928-23475974,23476108-23476194,
23476807-23477011,23477747-23477866
Length = 331
Score = 32.7 bits (71), Expect = 0.40
Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 5/60 (8%)
Frame = +1
Query: 313 SLTVTYRDGRVAQLENVYIRGSKIRFLILPDMLKNAPMF-----KRQGNKPTAGRGKSAI 477
++ +T + L+++ +RG+ IR+ ILPD L + + + KPTAGR A+
Sbjct: 204 TVKLTLKGKNPVTLDHLSVRGNNIRYYILPDSLNLETLLVEDTPRVKAKKPTAGRAAWAV 263
>11_06_0711 -
26508228-26508488,26508970-26509084,26509179-26509451,
26509629-26510197,26510489-26510597,26511002-26511544,
26511645-26511763,26511893-26512120,26512199-26512315,
26512410-26512506,26513169-26513569
Length = 943
Score = 29.1 bits (62), Expect = 5.0
Identities = 15/41 (36%), Positives = 25/41 (60%)
Frame = -1
Query: 640 IIPLTI*NIRQVQLKLSKKYLNASVEMVLTHLASLHGGPHL 518
++P TI +RQ K+ +KYLN+S +T +SL G ++
Sbjct: 642 LVPRTIQVLRQYVKKIDEKYLNSSDMEAVTGKSSLVSGDNV 682
>08_02_0926 - 22680661-22680765,22680935-22681084,22681473-22682294
Length = 358
Score = 28.7 bits (61), Expect = 6.6
Identities = 15/47 (31%), Positives = 26/47 (55%)
Frame = +3
Query: 528 PPWRLARWVRTISTLALRYFLDSLSCTCLIFQIVKGIISLSFLYIDI 668
PP R + + + +L L LD +S T L+F I++ +L L I++
Sbjct: 279 PPERFSFTFQNLRSLDLHACLDQISSTSLVFSILRCAPNLEKLEIEV 325
>02_04_0509 - 23554609-23555241,23555371-23556318
Length = 526
Score = 28.7 bits (61), Expect = 6.6
Identities = 18/52 (34%), Positives = 24/52 (46%)
Frame = -1
Query: 667 ISIYKNDNEIIPLTI*NIRQVQLKLSKKYLNASVEMVLTHLASLHGGPHLFH 512
+ I K DN +PLT NI+ V L + + S MV L+ L P H
Sbjct: 294 LRIQKEDNLDVPLTTGNIKAVLLDIFGAGSDTSSHMVQWVLSELMRNPEAMH 345
>02_04_0403 -
22622014-22622075,22622159-22622350,22624834-22624910,
22625026-22625039
Length = 114
Score = 28.7 bits (61), Expect = 6.6
Identities = 15/55 (27%), Positives = 29/55 (52%), Gaps = 5/55 (9%)
Frame = +1
Query: 313 SLTVTYRDGRVAQLENVYIRGSKIRFLILPDMLKNAPMF-----KRQGNKPTAGR 462
++ +T + +++ +RG+ IR+ ILPD L + + + KPTAG+
Sbjct: 42 TVKLTLKGKNPVTFDHLSVRGNNIRYYILPDSLNLETLLVEDTPRVKAKKPTAGK 96
>07_03_1123 -
24152403-24152515,24152761-24152854,24152946-24153087,
24153614-24153754,24154186-24154385
Length = 229
Score = 28.3 bits (60), Expect = 8.7
Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Frame = +3
Query: 525 GPPWRLARWVRTISTLALRYFLDSLSCT--CLIFQIVKGIIS 644
G WR+ RWVR +A + CT C+ ++++ +IS
Sbjct: 47 GSDWRINRWVRHFGQVARTFCSTERLCTIVCIGYKLMACVIS 88
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,051,438
Number of Sequences: 37544
Number of extensions: 398677
Number of successful extensions: 883
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 856
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 883
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2518669100
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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