Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP01_F_E05
(895 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g20580.1 68414.m02569 small nuclear ribonucleoprotein, putati... 69 3e-12
At1g76300.1 68414.m08862 small nuclear ribonucleoprotein D3, put... 69 4e-12
At5g27720.1 68418.m03325 small nuclear ribonucleoprotein, putati... 33 0.19
At1g20600.1 68414.m02573 DNA-binding protein-related low similar... 33 0.19
At5g47820.2 68418.m05908 kinesin-like protein (FRA1) identical t... 33 0.34
At5g47820.1 68418.m05907 kinesin-like protein (FRA1) identical t... 33 0.34
At3g02260.1 68416.m00207 auxin transport protein (BIG) nearly id... 32 0.45
At4g02840.1 68417.m00384 small nuclear ribonucleoprotein D1, put... 29 3.1
At5g43890.1 68418.m05367 flavin-containing monooxygenase family ... 29 5.5
At5g38580.1 68418.m04665 hypothetical protein 29 5.5
At5g09600.1 68418.m01111 succinate dehydrogenase cytochrome b su... 29 5.5
At3g50240.1 68416.m05494 kinesin motor protein-related KINESIN-L... 28 7.3
>At1g20580.1 68414.m02569 small nuclear ribonucleoprotein, putative
/ snRNP, putative / Sm protein, putative similar to
small nuclear ribonucleoprotein Sm D3 (snRNP core
protein D3, Sm-D3) [Mus musculus] SWISS-PROT:P43331
Length = 131
Score = 69.3 bits (162), Expect = 3e-12
Identities = 26/45 (57%), Positives = 37/45 (82%)
Frame = +3
Query: 174 VNMSIGVPIKVLHEAEGHVVTCETNTGEVYRGKLIEAEDNMNCQM 308
++ S+G+P+K+LHEA GH+VT E +GE+YRG +IE EDN NCQ+
Sbjct: 1 MSRSLGIPVKLLHEASGHIVTVELKSGELYRGSMIECEDNWNCQL 45
Score = 65.7 bits (153), Expect = 4e-11
Identities = 26/40 (65%), Positives = 38/40 (95%)
Frame = +1
Query: 316 LTVTYRDGRVAQLENVYIRGSKIRFLILPDMLKNAPMFKR 435
+T T +DG+V+QLE+V+IRGSK+RF+++PD+LK+APMFKR
Sbjct: 48 ITYTAKDGKVSQLEHVFIRGSKVRFMVIPDILKHAPMFKR 87
>At1g76300.1 68414.m08862 small nuclear ribonucleoprotein D3,
putative / snRNP core protein D3, putative / Sm protein
D3, putative similar to SWISS-PROT:P43331 small nuclear
ribonucleoprotein Sm D3 (snRNP core protein D3, Sm-D3)
[Mouse]
Length = 128
Score = 68.9 bits (161), Expect = 4e-12
Identities = 33/56 (58%), Positives = 44/56 (78%)
Frame = +1
Query: 313 SLTVTYRDGRVAQLENVYIRGSKIRFLILPDMLKNAPMFKRQGNKPTAGRGKSAIL 480
++T T +DG+V+QLE+V+IRGS +RFL++PDMLKNAPMF K G+GKSA L
Sbjct: 47 NITYTAKDGKVSQLEHVFIRGSLVRFLVIPDMLKNAPMF-----KDVRGKGKSASL 97
Score = 66.5 bits (155), Expect = 2e-11
Identities = 24/45 (53%), Positives = 37/45 (82%)
Frame = +3
Query: 174 VNMSIGVPIKVLHEAEGHVVTCETNTGEVYRGKLIEAEDNMNCQM 308
++ S+G+P+K+LHE+ GH+V+ E +GE+YRG +IE EDN NCQ+
Sbjct: 1 MSRSLGIPVKLLHESSGHIVSVEMKSGELYRGSMIECEDNWNCQL 45
>At5g27720.1 68418.m03325 small nuclear ribonucleoprotein, putative
/ snRNP, putative / Sm protein, putative similar to
SWISS-PROT:Q9QXA5 U6 snRNA-associated Sm-like protein
LSm4 [Mus musculus]
Length = 129
Score = 33.5 bits (73), Expect = 0.19
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +3
Query: 192 VPIKVLHEAEGHVVTCETNTGEVYRGKLIEAEDNMNCQM 308
+P+ +L A+GH + E GE Y G L+ + MN +
Sbjct: 2 LPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHL 40
>At1g20600.1 68414.m02573 DNA-binding protein-related low similarity
to RAV2 [Arabidopsis thaliana] GI:3868859
Length = 237
Score = 33.5 bits (73), Expect = 0.19
Identities = 13/18 (72%), Positives = 18/18 (100%)
Frame = +1
Query: 334 DGRVAQLENVYIRGSKIR 387
DG+V+QLE+V+IRGSK+R
Sbjct: 215 DGKVSQLEHVFIRGSKVR 232
>At5g47820.2 68418.m05908 kinesin-like protein (FRA1) identical to
kinesin-like protein [Arabidopsis thaliana] GI:27260890;
contains Pfam profile PF00225: Kinesin motor domain
Length = 1035
Score = 32.7 bits (71), Expect = 0.34
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +3
Query: 495 WSRTSRWKRWGPPWRLARWVRTISTLALR 581
W +WK W PWRL+ W+RT L+
Sbjct: 995 WIVQFKWK-WQKPWRLSEWIRTSDETLLK 1022
>At5g47820.1 68418.m05907 kinesin-like protein (FRA1) identical to
kinesin-like protein [Arabidopsis thaliana] GI:27260890;
contains Pfam profile PF00225: Kinesin motor domain
Length = 1035
Score = 32.7 bits (71), Expect = 0.34
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +3
Query: 495 WSRTSRWKRWGPPWRLARWVRTISTLALR 581
W +WK W PWRL+ W+RT L+
Sbjct: 995 WIVQFKWK-WQKPWRLSEWIRTSDETLLK 1022
>At3g02260.1 68416.m00207 auxin transport protein (BIG) nearly
identical to auxin transport protein; BIG [Arabidopsis
thaliana] GI:21779966; contains Pfam profiles PF02207:
Putative zinc finger in N-recognin, PF00569: Zinc finger
ZZ type
Length = 5098
Score = 32.3 bits (70), Expect = 0.45
Identities = 22/70 (31%), Positives = 29/70 (41%), Gaps = 1/70 (1%)
Frame = +3
Query: 180 MSIGVPIKVLHEAEGHVVTCETNTGEVYRGKLIEAED-NMNCQMTLVNSHIQRWPSCTAR 356
M I + +LH H TC T+ R KL E N +T V H+ W S AR
Sbjct: 769 MLISRLLVLLHHMLLHPNTCPTSLMLDLRSKLREVRSCGSNLHVT-VGDHLSSWASLVAR 827
Query: 357 ECVHPWFQDQ 386
W +D+
Sbjct: 828 GITDSWAEDE 837
>At4g02840.1 68417.m00384 small nuclear ribonucleoprotein D1,
putative / snRNP core protein D1, putative / Sm protein
D1, putative similar to small nuclear ribonucleoprotein
Sm D1 (snRNP core protein D1, Sm-D1, Sm-D autoantigen)
[Mouse] SWISS-PROT:P13641
Length = 116
Score = 29.5 bits (63), Expect = 3.1
Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 5/55 (9%)
Frame = +1
Query: 313 SLTVTYRDGRVAQLENVYIRGSKIRFLILPDMLKNAPMF-----KRQGNKPTAGR 462
++ +T + L+++ +RG+ IR+ ILPD L + + + KPTAG+
Sbjct: 42 AVKLTLKGKNPVTLDHLSVRGNNIRYYILPDSLNLETLLVEDTPRIKPKKPTAGK 96
>At5g43890.1 68418.m05367 flavin-containing monooxygenase family
protein / FMO family protein similar to
flavin-containing monooxygenases YUCCA [gi:16555352],
YUCCA2 [gi:16555354], and YUCCA3 [gi:16555356] from
Arabidopsis thaliana; contains Pfam profile PF00743
Length = 424
Score = 28.7 bits (61), Expect = 5.5
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Frame = +3
Query: 213 EAEGHVV-TCETNTGEVYRGK--LIEAEDNMNCQMTLVNSHIQRWPSCTARECVH 368
E EG V+ +CE +GE YRGK L+ N +++L ++ S R VH
Sbjct: 173 EFEGEVIHSCEYKSGEKYRGKSVLVVGCGNSGMEVSLDLANHNANASMVVRSSVH 227
>At5g38580.1 68418.m04665 hypothetical protein
Length = 168
Score = 28.7 bits (61), Expect = 5.5
Identities = 13/35 (37%), Positives = 16/35 (45%)
Frame = -3
Query: 260 NFTGICFTSHYMTFRLVKYFNRHTDRHVYVLVKKN 156
NF C S T +YF R DR + V + KN
Sbjct: 88 NFVPECLLSSLQTLLWSRYFGRQQDRDIAVYILKN 122
>At5g09600.1 68418.m01111 succinate dehydrogenase cytochrome b
subunit family protein similar to succinate
dehydrogenase subunit 3 [Gossypium hirsutum]
GI:14861484; contains Pfam profile PF01127: Succinate
dehydrogenase cytochrome b subunit
Length = 213
Score = 28.7 bits (61), Expect = 5.5
Identities = 18/68 (26%), Positives = 32/68 (47%)
Frame = -3
Query: 416 FFNMSGNIKNLILEPRMYTFSSCATRPSLYVTVNESHLAIHIILSFN*FPSINFTGICFT 237
F +SG+IK EP++ +F + S+Y S L+I FN + TG+ F
Sbjct: 105 FSTISGDIKTTQEEPKIKSFRPLSPHLSVYQPQMNSMLSI-----FNRISGVYLTGVTFA 159
Query: 236 SHYMTFRL 213
+ + ++
Sbjct: 160 GYLLYLKM 167
>At3g50240.1 68416.m05494 kinesin motor protein-related KINESIN-LIKE
PROTEIN KIF4, Homo sapiens, EMBL:AF179308
Length = 1051
Score = 28.3 bits (60), Expect = 7.3
Identities = 8/21 (38%), Positives = 13/21 (61%)
Frame = +3
Query: 495 WSRTSRWKRWGPPWRLARWVR 557
W +WK W PW+L+ W++
Sbjct: 1000 WLLQFKWK-WQKPWKLSEWIK 1019
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,682,476
Number of Sequences: 28952
Number of extensions: 345396
Number of successful extensions: 749
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 730
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 749
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2100696768
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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