Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_E03
         (873 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0479 + 3606663-3607448                                           30   0.090
01_01_0892 + 7037384-7037795,7038447-7038962,7039507-7039593,703...    32   0.69 
02_01_0458 + 3291563-3291733,3292082-3292769,3292847-3293363,329...    28   8.5  
01_01_0070 - 542603-542686,542803-543441                               28   8.5  

>07_01_0479 + 3606663-3607448
          Length = 261

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 18/59 (30%), Positives = 20/59 (33%), Gaps = 2/59 (3%)
 Frame = +2

Query: 269 PXXXPXXMAXXKFSXPXEGXXGFXPXXKR-PKPXXXPXXXGPPPXNPP-XXSGXPXXXP 439
           P   P  M   +   P +   G  P     P P   P   GPPP  PP    G P   P
Sbjct: 171 PGQMPPPMRPPQMPIPFQRPPGVPPAFPGGPPPPPGPFMRGPPPMGPPQVRPGMPGGPP 229



 Score = 29.5 bits (63), Expect(2) = 0.090
 Identities = 11/20 (55%), Positives = 11/20 (55%)
 Frame = +2

Query: 557 GPPXXGGPLXXGPPPXXXPQ 616
           GPP   GP   GPPP   PQ
Sbjct: 200 GPPPPPGPFMRGPPPMGPPQ 219



 Score = 24.2 bits (50), Expect(2) = 0.090
 Identities = 13/37 (35%), Positives = 14/37 (37%), Gaps = 3/37 (8%)
 Frame = +2

Query: 341 PXXKRPKPXXXPXXXGP---PPXNPPXXSGXPXXXPG 442
           P  + P P   P    P   PP  PP   G P   PG
Sbjct: 170 PPGQMPPPMRPPQMPIPFQRPPGVPPAFPGGPPPPPG 206


>01_01_0892 +
           7037384-7037795,7038447-7038962,7039507-7039593,
           7039698-7039768,7040148-7040224,7040380-7040527,
           7040973-7041134,7041374-7041694
          Length = 597

 Score = 31.9 bits (69), Expect = 0.69
 Identities = 13/34 (38%), Positives = 14/34 (41%)
 Frame = +3

Query: 339 PPKXNGQNPXXTLXXLGPPRXTPPXXPGPPXXXP 440
           PP  N  +       L PP  TPP  P PP   P
Sbjct: 26  PPASNNSSSPPAPGSLSPPSLTPPAAPSPPSTTP 59


>02_01_0458 +
           3291563-3291733,3292082-3292769,3292847-3293363,
           3293438-3293637,3294137-3294372,3294469-3295302
          Length = 881

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 12/33 (36%), Positives = 12/33 (36%)
 Frame = +2

Query: 341 PXXKRPKPXXXPXXXGPPPXNPPXXSGXPXXXP 439
           P    P P   P    PPP  PP   G P   P
Sbjct: 357 PPPPPPPPPPPPPPPRPPPPPPPIKKGAPPPAP 389


>01_01_0070 - 542603-542686,542803-543441
          Length = 240

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 12/30 (40%), Positives = 12/30 (40%)
 Frame = +2

Query: 350 KRPKPXXXPXXXGPPPXNPPXXSGXPXXXP 439
           K P P   P    PPP  PP  S  P   P
Sbjct: 89  KAPPPPVTPPPVTPPPVTPPPVSPPPATPP 118


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,190,730
Number of Sequences: 37544
Number of extensions: 237660
Number of successful extensions: 887
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 467
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 759
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2456227356
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)