Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_E03
         (873 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_2012| Best HMM Match : Extensin_2 (HMM E-Value=0.1)                 25   1.6  
SB_7937| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   2.1  
SB_59302| Best HMM Match : Collagen (HMM E-Value=0)                    30   2.8  
SB_38796| Best HMM Match : RRM_1 (HMM E-Value=0)                       29   3.8  
SB_33909| Best HMM Match : FH2 (HMM E-Value=0)                         28   8.7  

>SB_2012| Best HMM Match : Extensin_2 (HMM E-Value=0.1)
          Length = 305

 Score = 25.4 bits (53), Expect(2) = 1.6
 Identities = 12/30 (40%), Positives = 12/30 (40%), Gaps = 2/30 (6%)
 Frame = +2

Query: 356 PKPXXXPXXXGPPPXNP--PXXSGXPXXXP 439
           P P   P   GPPP  P  P   G P   P
Sbjct: 140 PPPPIAPATGGPPPPPPIAPATGGPPPPPP 169



 Score = 23.8 bits (49), Expect(2) = 1.6
 Identities = 9/18 (50%), Positives = 9/18 (50%)
 Frame = +2

Query: 560 PPXXGGPLXXGPPPXXXP 613
           PP  GGP    PPP   P
Sbjct: 189 PPPSGGPPPPPPPPPPPP 206


>SB_7937| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 618

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 15/42 (35%), Positives = 16/42 (38%), Gaps = 2/42 (4%)
 Frame = +2

Query: 323 GXXGFXPXXKRPKPXXXPXXXGPP--PXNPPXXSGXPXXXPG 442
           G  G  P    P+P   P   GPP  P  PP   G P    G
Sbjct: 395 GPRGMGPGMGPPRPMGPPGPHGPPFGPRGPPPHGGPPRGPMG 436


>SB_59302| Best HMM Match : Collagen (HMM E-Value=0)
          Length = 993

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 25/95 (26%), Positives = 27/95 (28%), Gaps = 1/95 (1%)
 Frame = +2

Query: 320 EGXXGFXPXXKRPK-PXXXPXXXGPPPXNPPXXSGXPXXXPGXXGXXXXXXXXXXXXXXX 496
           +G  GF P  + P  P   P   GPP   PP   G P    G  G               
Sbjct: 48  DGPPGF-PGPQGPNGPKGPPGLPGPP--GPPGFQGPPGNPAGAIGPPGLPGPNGVNGPPG 104

Query: 497 XXXXXXXXXXGGXPXXXXFXGPPXXGGPLXXGPPP 601
                      G P      GPP   GP     PP
Sbjct: 105 ELGDMGPPGPPGPPGPQMPPGPPGLPGPPGPAGPP 139


>SB_38796| Best HMM Match : RRM_1 (HMM E-Value=0)
          Length = 382

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 15/46 (32%), Positives = 15/46 (32%)
 Frame = +2

Query: 314 PXEGXXGFXPXXKRPKPXXXPXXXGPPPXNPPXXSGXPXXXPGXXG 451
           P  G  G  P    P P   P    PPP   P     P   PG  G
Sbjct: 228 PPVGMLGHPPMGAPPPPHSMPPPGMPPPGMMPPPGFPPMGMPGMGG 273


>SB_33909| Best HMM Match : FH2 (HMM E-Value=0)
          Length = 1063

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 14/42 (33%), Positives = 16/42 (38%)
 Frame = +2

Query: 314 PXEGXXGFXPXXKRPKPXXXPXXXGPPPXNPPXXSGXPXXXP 439
           P  G  G  P    P+P        PPP  PP  +G P   P
Sbjct: 718 PPPGCAGLPPPPPSPQP-GCAGLPPPPPPPPPGCAGLPPPPP 758


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,539,670
Number of Sequences: 59808
Number of extensions: 171743
Number of successful extensions: 729
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 219
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 545
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2503194881
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)